Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00869 ATGGAAGCCAGCTCGGTTTCCAAAATGCAGTTTGCGTTGTTTGGGTTGGCGTTGTGGTTGGGTGTTCAGCTGGAGTGGGTTCACTGTAGTGTTACCTACGACAGAAAGGCCATCCTCATCAATGGCCAAAGGAGACTCCTTTTTTCTGGCTCTATACATTACCCCAGAAGTACCCCAGATATGTGGGAAGATCTGATTTACAAGGCTAAGGAGGGAGGGCTAGACGTCATTGAAACCTACGTCTTTTGGAATGTTCACGAGCCTTCTCCTGGCAATTTCAACTTTGAAGGAAGGTATGATCTGGTGAGGTTCGTGAAGACAATACAGAAAGCGGGGCTATATGCTCATCTTCGCGTTGGACCTTATGTCTGTGCAGAATGGAATTTCGGTGGTTTTCCTATTTGGCTCAAATATGTTCCAGGCATCAGCTTTAGAACAGACAATGAACCTTTCAAGAGGGCAATGCAAGGGTTCACTGAGAAGATTGTGGGAATGATGAAGAGTGAGCGTCTCTATGAATCTCAGGGTGGCCCTATAATACTCTCTCAGATTGAGAATGAGTACGGGCTACAGAGTAAATTACTTGGACCCCCTGGCCAAAGGTATATGAACTGGGCTGCAAAAATGGCTATTGAAACGGGAACGGGAGTCCCCTGGGTGATGTGCAAGGAAGATGATGCACCAGATCCTGTGATAAACACATGCAATGGCTTTTACTGTGATTATTTTACTCCTAATAAACCCTACAAGCCTTCAATGTGGACTGAGGCTTGGAGTGGATGGTTTTCTGAATTTGGAGGTTCAGTACATGAAAGACCTGTTCAGGATTTGGCATTTGCAGTTGCCCGATTCATACAGAAAGGAGGATCTTTTGTAAACTACTACATGTATCATGGAGGAACCAATTTTGGCCGCACAGCTGGAGGCCCTTTCATCACCACAAGTTATGATTATAATGCTCCACTGGATGAATACGGTTTGATCAGGCAACCTAAGTATGGTCATCTAAAGGAGCTTCATAGGGCTATTAAGATGTGTGAGCGGGCTTTAGTTTCAACTGACCCAACTGTTACTTCATTGGGGAATTTTCAACAGGCTCATGTATACTCGGCAAAATCTGGAGACTGTGCTGCATTCCTCTCAAACTATGATGCAAAATCTTCTGTTAGAGTGGTGTTCAACAATATGCACTATAACGTACCTCCGTGGTCCATCAGCATCCTTCCTGATTGCAGAAATGTTGTTTTTAATACAGCGAAAGTTGGAGTGCAAACATCTCAGATGCAAATGCTGCCAACAAATACACATATGTTCTCATGGGAGAGATTTGATGAGGAGGTTTCGTCTCTTGATGACAGCTCTGCAATTACAATCACTACTTCTGGTCTCCTGGAACAGATAAATGTAACACGGGATACCAGTGATTATCTTTGGTATATAACTAGTGTTGATATAGGTTCATCCGAATCCTTTCTCCGAGGAGGCAAACTACCTTCTCTCTTTGTTCAATCCATGGGTCATGCTGTGCATGTTTTTATCAATGGTCAACTTTCAGGTTCTGCCTTTGGAACACGGGAGGATAGGAGAGTCAGATATACTGGCCCGGTAAACCTCCATGCTGGCACAAACAGAATAGCACTGCTCAGCGTTGCCGTTGGACTTCCTAATGTGGGAGGACATTTTGAGACTTGGAACACAGGAATCCTTGGTCCAGTTGTACTCCGGGGACTTGACCGGGGAAAATGGGATTTATCTTGGCGTAAATGGACTTATCAGGTTGGGCTGAAAGGAGAGGCCATGAATCTTGCATCTCCAAATGGTATCTCCTCTGTAGAGTGGATGCAGTCAGCATTAGCTTCAGACAAAAATCAACCACTGACGTGGCACAAGACTTATTTTGATGCTCCAGATGGAGACGAGCCGTTGGCATTGGACATGGAGGGTATGGGTAAAGGTCAAATATGGATCAATGGACTGAGCATTGGAAGATACTGGACTGCTCCAGCTGCTGGTAATTGCAATAATTGCAGCTATGTGGGCACCTTCAGACCTCCAAAGTGCCAGGTTGGTTGTGGCCAACCAACCCAGCGATGGTACCATGTACCTCGATCTTGGTTGAAGCCAAATCATAATCTGCTAGTTGTTTTTGAGGAACTCGGGGGAGATACCTCAAAGATATCACTTGTAAAGAGAGCAGTGAGCAGTGTCTGTGCTGATGTGTCTGAGTACCACCTAAGTGTTACGAATTGGGAGATTGAAAGCTATGAGAAATCAATAGAGTTCCATGCCCCCAAAGTTTACTTGCATTGCAGTCCTGGCCAGACCATCTCGTCCATTAAATTTGCAAGCTTTGGAACTCCTCTCGGGACCTGTGGAAATTATGAGCAGGGAGATTGTCATTCTCCCTCTTCCTATTCCATTCTAGAGAAGACATGTATAGGAAAGCGAAGATGCACGGTCATTGTGTCAAACAGAAACTTTGGGGATGACCCTTGTCCAAATGTGTTGAAGAGGTTATCAGTTGAAGCCGTTTGCACTCCAACCAAGTGGAGGGGCTGA 2559 0.451 MEASSVSKMQFALFGLALWLGVQLEWVHCSVTYDRKAILINGQRRLLFSGSIHYPRSTPDMWEDLIYKAKEGGLDVIETYVFWNVHEPSPGNFNFEGRYDLVRFVKTIQKAGLYAHLRVGPYVCAEWNFGGFPIWLKYVPGISFRTDNEPFKRAMQGFTEKIVGMMKSERLYESQGGPIILSQIENEYGLQSKLLGPPGQRYMNWAAKMAIETGTGVPWVMCKEDDAPDPVINTCNGFYCDYFTPNKPYKPSMWTEAWSGWFSEFGGSVHERPVQDLAFAVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYNAPLDEYGLIRQPKYGHLKELHRAIKMCERALVSTDPTVTSLGNFQQAHVYSAKSGDCAAFLSNYDAKSSVRVVFNNMHYNVPPWSISILPDCRNVVFNTAKVGVQTSQMQMLPTNTHMFSWERFDEEVSSLDDSSAITITTSGLLEQINVTRDTSDYLWYITSVDIGSSESFLRGGKLPSLFVQSMGHAVHVFINGQLSGSAFGTREDRRVRYTGPVNLHAGTNRIALLSVAVGLPNVGGHFETWNTGILGPVVLRGLDRGKWDLSWRKWTYQVGLKGEAMNLASPNGISSVEWMQSALASDKNQPLTWHKTYFDAPDGDEPLALDMEGMGKGQIWINGLSIGRYWTAPAAGNCNNCSYVGTFRPPKCQVGCGQPTQRWYHVPRSWLKPNHNLLVVFEELGGDTSKISLVKRAVSSVCADVSEYHLSVTNWEIESYEKSIEFHAPKVYLHCSPGQTISSIKFASFGTPLGTCGNYEQGDCHSPSSYSILEKTCIGKRRCTVIVSNRNFGDDPCPNVLKRLSVEAVCTPTKWRG 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00869 852 SUPERFAMILY Galactose-binding domain-like 405 578 IPR008979 -
Spst2g00869 852 ProSiteProfiles SUEL-type lectin domain profile. 764 846 IPR000922 GO:0030246
Spst2g00869 852 FunFam Beta-galactosidase 596 737 - -
Spst2g00869 852 FunFam Beta-galactosidase 756 849 - -
Spst2g00869 852 PRINTS Glycosyl hydrolase family 35 signature 62 80 IPR001944 GO:0004553|GO:0005975
Spst2g00869 852 PRINTS Glycosyl hydrolase family 35 signature 624 638 IPR001944 GO:0004553|GO:0005975
Spst2g00869 852 PRINTS Glycosyl hydrolase family 35 signature 117 136 IPR001944 GO:0004553|GO:0005975
Spst2g00869 852 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Spst2g00869 852 PRINTS Glycosyl hydrolase family 35 signature 651 667 IPR001944 GO:0004553|GO:0005975
Spst2g00869 852 PRINTS Glycosyl hydrolase family 35 signature 174 189 IPR001944 GO:0004553|GO:0005975
Spst2g00869 852 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Spst2g00869 852 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Spst2g00869 852 PRINTS Glycosyl hydrolase family 35 signature 41 58 IPR001944 GO:0004553|GO:0005975
Spst2g00869 852 Gene3D Glycosidases 27 347 - -
Spst2g00869 852 SUPERFAMILY Galactose-binding domain-like 587 748 IPR008979 -
Spst2g00869 852 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 176 188 IPR019801 GO:0004553|GO:0005975
Spst2g00869 852 Pfam Beta-sandwich domain in beta galactosidase 350 421 IPR041392 -
Spst2g00869 852 FunFam Beta-galactosidase 295 423 - -
Spst2g00869 852 Gene3D - 751 851 IPR043159 -
Spst2g00869 852 FunFam Beta-galactosidase 26 346 - -
Spst2g00869 852 FunFam Beta-galactosidase 451 588 - -
Spst2g00869 852 Pfam Glycosyl hydrolases family 35 38 342 IPR031330 -
Spst2g00869 852 Gene3D - 599 738 - -
Spst2g00869 852 Pfam Galactose binding lectin domain 768 845 IPR000922 GO:0030246
Spst2g00869 852 SUPERFAMILY (Trans)glycosidases 30 347 IPR017853 -
Spst2g00869 852 CDD Gal_Rha_Lectin_BGal 764 845 - -
Spst2g00869 852 PANTHER BETA-GALACTOSIDASE RELATED 24 745 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00869 Spst-Chr2 7337498 7342444 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00335 9 3160694 3165468 Spst2g00869 2 7337498 7342444 ECH
Spst8g01960 8 26275075 26280350 Spst2g00869 2 7337498 7342444 ECH
Spst2g00869 2 7337498 7342444 Spst2g00869 2 7337498 7342444 ECH