Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00719 ATGATCCAAGAACTGTTGGGTGCTGCTACTGCTACCCTCGTAGCAGGAGAAAGAAAAATCTCCACTAATAATGGTGGAGGAGGAGGAGGACTTCTAGTAACACCACCCACACCATCTTTTCCTTCTCCATCTCCTTCTTGCAAATCAACTATCACTACTTCCACTAACACCGCCACCTCGTCAAACTCGGACAACCAAAATTTGAGGTGCCCTCGTTGTGATTCATCAAACACAAAGTTTTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGGTACTGGACCAAAGGCGGTGCCCTCAGGAATGTTCCCATCGGAGGTGGCTGCCGGAAAAGCAAGAGCTCCGGCATGTCCAACTCTGTGGCAAAGCAGACCGCCACAAAGATGAAAGCAGTGGCATCAGAGTTCGCACGGCCTCAGGGACTCTTTGACCAAGACCTTCCACAAACCCCAATCCTGTGGGGTTCACCGCAAAATACTCAACTGATGGCTTTACTAAGAGCTACCCATAACCATAACCAAAACCAAAACCGAAACCCTAACCCTAACCCTAGTCCCATGTCAATTGCTGTCAAGGGAGAAGGGAACTTAATGGAATCTCACTCCCACATGGTCACTGAGCCATTGCTCGCAAATGGGTTGTTGAATAGTACTAGAACTAGTGTAGGCTATGATGGTGTGGGAGAACTTCCTTCACTGGGTCTATGCAGCTCCTTTTGGAGGAACAATAATCAAGATCAGATTCAGCAACAAAGCAACGGTTTTGTACTTGGAGAACATCAAAGTAGTGGAGTTCAAGAACTTTACCAGAAGCTCAGGTCATCATCATCATCAGTTAATTATTGTGGCAGTGATAACTCACCAGTGTTTCTAGGCAACATGACTTCTTCCTCTTCTTTGTCCAACATTTTGGAGTCATCTTCAGTTTCTGGCAGTGAATTCGGGTGCTGGAATCCAACCCTTTCCTGGTCTGATCTTCCCACAACAAGTGGAGCATATCCTTAA 1029 0.4674 MIQELLGAATATLVAGERKISTNNGGGGGGLLVTPPTPSFPSPSPSCKSTITTSTNTATSSNSDNQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKSSGMSNSVAKQTATKMKAVASEFARPQGLFDQDLPQTPILWGSPQNTQLMALLRATHNHNQNQNRNPNPNPSPMSIAVKGEGNLMESHSHMVTEPLLANGLLNSTRTSVGYDGVGELPSLGLCSSFWRNNNQDQIQQQSNGFVLGEHQSSGVQELYQKLRSSSSSVNYCGSDNSPVFLGNMTSSSSLSNILESSSVSGSEFGCWNPTLSWSDLPTTSGAYP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00719 342 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
Spst2g00719 342 Pfam Dof domain, zinc finger 66 122 IPR003851 GO:0003677|GO:0006355
Spst2g00719 342 MobiDBLite consensus disorder prediction 180 199 - -
Spst2g00719 342 MobiDBLite consensus disorder prediction 44 68 - -
Spst2g00719 342 MobiDBLite consensus disorder prediction 180 194 - -
Spst2g00719 342 MobiDBLite consensus disorder prediction 24 68 - -
Spst2g00719 342 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
Spst2g00719 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 59 263 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00719 Spst-Chr2 6015660 6016688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00719 36 128 C2C2-Dof Transcription Factor Family AT5G65590 64.211 2.22e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst2g00719 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00719 - - gmx:778100 507.679