Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02659 ATGGAGAGAGGATGGAAGGCTAATAATGTTGAGATTTCACCAAATTGTCCTAGGTGTGGTTCTTCCAATACCAAATTCTGCTACTACAATAACTACAGTTCAACTCAGCCACGGTACTTTTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGATCCCTCCGCAATGTGCCAATTGGTGGTGGCTGCCGCAAAAGTAGAAGGGGTAAATATAATAAAGCCTTAAGACAAGCCAATAGCTCAGTTGGGCATTCTGATGATTTAAGGCCCTCATCTTCAGTTGTGTCTGATGGACCAAATATTGATCTTGCACAAGTCTATGCAAGTTTTCTCAATCTGAAGCCAGATCAAGTGCAAACAGCTTGCTATCCTTCTCCTGAGTATTCAAGCATAATGAACACTGATTTTGGCCACAGCCCTTTGTCTGCAGAGCTTGGTTTGCATTTTCATGAACAACCCTCAGAATCCCATTTTGGTGAGGATATCGAAATGTACTTTTGCGGCTTGAACTCTATCCAGAAGCATCAAGAATATAGTAGCAGTCATGACACTACAGTTACAAAAACAAACTTTGAGTTGCCACCTTTACCAGGTGAAGAGGCAGAAACCTCACATGGTAATGTGTTGTGGTCCAATTCCGAGATTATGGTAGATCATGCTTTGCAAGCCACTCAATCGCCCCTTTTTGGACCAGAGGCTTATGATGCAGACTTCTTAATGGGCAATTGTTGGAGCCACTTCGATTTGCCGAGGGATGCTACTTTTTCCACTCCTTGA 777 0.435 MERGWKANNVEISPNCPRCGSSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRGKYNKALRQANSSVGHSDDLRPSSSVVSDGPNIDLAQVYASFLNLKPDQVQTACYPSPEYSSIMNTDFGHSPLSAELGLHFHEQPSESHFGEDIEMYFCGLNSIQKHQEYSSSHDTTVTKTNFELPPLPGEEAETSHGNVLWSNSEIMVDHALQATQSPLFGPEAYDADFLMGNCWSHFDLPRDATFSTP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02659 258 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 171 IPR045174 GO:0003700|GO:0006355
Spst1g02659 258 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Spst1g02659 258 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
Spst1g02659 258 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02659 Spst-Chr1 34987302 34988078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02659 5 253 C2C2-Dof Transcription Factor Family AT3G52440 40.602 1.44e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst1g02659 zf-Dof 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02659 - - vun:114179652 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02659 1 34987302 34988078 Spst1g02659 1 34987302 34988078 ECH
Spst1g02659 1 34987302 34988078 Spst7g00163 7 1244264 1245145 PCT