Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02265 ATGAAGAGGGATCACCAAGAAAGCTGCGGCCGAGGGGTGATGGGTGAGTGTTCCTCAATGTCGAACGGGAAGGCCAAGATGTGGCAGGAAGAGCAGCCGCAGCAGGGAGGAGGGATGGATGAGTACCTGGCGGAGTTAGGGTACAAGGTGCGTGCCTCCGACATGGCTGACGTGGCACAGAAGCTGGAGCAGCTGGAGATGGTGATGGGGAGTGCCCAGGAAGAGGGAATTTCCCACCTTGCTTCCGACACCGTTCACTACGACCCCACGGATCTCCATGCCTGGGTCCAAAATATGTTAACCGAACTCAACCCCGAACCCAACAACATCATCCTCGATCCGTCTTCTTTCTTAATCGACAACCCCGAACCCAGCAACATCATCCTCGATCCATCTTCTTTCTTAATCGACAACTCCGTACACCCTTCCTCCATCCTCGCCACAACCACCGCAGGCGTTTTCAACGACGACTCCGAATATGACCTCAGAGCCATTCCTGGAAAAGCAGCGTACCCTCCTCAACACAACACAAACAACGGCACCACCGTTAACACCACCACCAACAGTACCAAAAACATGGAGGAAATTGAACCAGGTAACAACAAGCGCCTCAAGGCTTCCCCAAGTGGATCCCCAGACTCCGCGTCGGAGCCCACGCGCCCGGTGGTCCTCGTTGAGGAAACCGGCGTGCGTCTTGTGCACACTCTCATGGCGTGCGGGGAGGCCGTCCAGCAGGAGAATCTGAAGCTCGCACAGGCGCTGGTGAGCCACGTGGGCATGCTGGCGGCGTCGCAAGCCGGCGCCATGAAGAAAGTGGCGTCGTACTTCGCTCAAGCCCTGGCGCGTCGAATCTACGGAAGCTTCCGCGAGGAAACCCTGGATTCCTCCCTCTCCGACGTTCTCCACATGGACTTCTACGAGTCCTGCCCTTATCTCAAGTTCGCGCACTTCACCGCCAACCAGGCCATTCTCGAAGCCTTCGCCACCGCTGGGAGAGTCCACGTCATCGATTTCGGCCTCAAACAAGGGATGCAGTGGCCCGCCCTCATGCAGGCCCTCGCATTGCGCCCCGGCGGGCCTCCAACCTTCCGCTTAACCGGGATCGGGCCCCCGCAGCCCGACAACACCGACGCCCTACAGAAAGTGGGCTGGAAGCTAGCCCAATTAGCCCAAACCATCGGCGTCCAGTTCGAGTTCCGCGGATTCGTCTGCAGCAGCCTCGCAGATCTCGACCCGAACATGCTCGAGATCCGACCCGGAGAAGCCGTCGCTGTCAACTCTATCTTCGAGCTCCACCGCATGCTGGCCCGACCCGGATCCTTTGACAAGGTGATGGAAACAGTTAAAAAACTCAACCCCAAAATCGTTACCATCGTGGAGCAAGAAGCGAACCACAATGGACCGGTTTTCCTCGACCGGTTCAATGAAGCCTTGCATTACTACTCGAGTATGTTTGATTCGCTGGAGGGTTCTTCCTCTTCGGGCGGGATGTCGGAGTTGTACCTTGGAAGACAGATATGCAACGTGGTGGCGTGCGAAGGCGTTGAGCGCGTAGAGCGTCATGAGACTTTGAGCCAGTGGAGGGGGCGAATGGGCTCAGCCGGGTTCGACCCGGTTCATCTCGGATCGAACGCGTTCAAGCAAGCGAGTATGTTGCTGGCGCTATTCGCAGGGGGTGGCGGGTACAGAGTGGAGGAGAATAACGGGTGCCTCATGCTCGGGTGGCACACGAGGCCTCTCATCGCTACCTCCGCGTGGAAGCTTCCCTCGCCCGATTCGTAG 1782 0.5802 MKRDHQESCGRGVMGECSSMSNGKAKMWQEEQPQQGGGMDEYLAELGYKVRASDMADVAQKLEQLEMVMGSAQEEGISHLASDTVHYDPTDLHAWVQNMLTELNPEPNNIILDPSSFLIDNPEPSNIILDPSSFLIDNSVHPSSILATTTAGVFNDDSEYDLRAIPGKAAYPPQHNTNNGTTVNTTTNSTKNMEEIEPGNNKRLKASPSGSPDSASEPTRPVVLVEETGVRLVHTLMACGEAVQQENLKLAQALVSHVGMLAASQAGAMKKVASYFAQALARRIYGSFREETLDSSLSDVLHMDFYESCPYLKFAHFTANQAILEAFATAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQKVGWKLAQLAQTIGVQFEFRGFVCSSLADLDPNMLEIRPGEAVAVNSIFELHRMLARPGSFDKVMETVKKLNPKIVTIVEQEANHNGPVFLDRFNEALHYYSSMFDSLEGSSSSGGMSELYLGRQICNVVACEGVERVERHETLSQWRGRMGSAGFDPVHLGSNAFKQASMLLALFAGGGGYRVEENNGCLMLGWHTRPLIATSAWKLPSPDS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02265 593 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 189 583 IPR005202 -
Spst1g02265 593 Pfam GRAS domain family 232 587 IPR005202 -
Spst1g02265 593 MobiDBLite consensus disorder prediction 1 38 - -
Spst1g02265 593 Coils Coil 55 75 - -
Spst1g02265 593 MobiDBLite consensus disorder prediction 169 219 - -
Spst1g02265 593 FunFam DELLA protein GAI 38 103 - -
Spst1g02265 593 Gene3D - 38 103 IPR038088 -
Spst1g02265 593 SMART DELLA_2 40 113 - -
Spst1g02265 593 MobiDBLite consensus disorder prediction 172 195 - -
Spst1g02265 593 ProSiteProfiles GRAS family profile. 223 587 IPR005202 -
Spst1g02265 593 Pfam Transcriptional regulator DELLA protein N terminal 40 107 IPR021914 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02265 Spst-Chr1 31301327 31303108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02265 1 588 GRAS Transcription Factor Family AT2G01570 57.097 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst1g02265 GRAS 1.6e-135 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02265 1 31301327 31303108 Spst1g02265 1 31301327 31303108 ECH
Spst8g00312 8 2741677 2743311 Spst1g02265 1 31301327 31303108 PCT