Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02262 ATGGAGAACTTGTTGGGTCTGCTGAGAATTAATGTTCAAAAAGGTGTCAATCTCGCTGTCAGGGATGTTGTGAGCAGCGACCCTTATGTTGTCATCAAAATGGGCAAGCAGAAGCTGAAGACTCGGGTGATCAAGAAGAATCTAAATCCTGAATGGAATGATGAGTTGACCTTGTCTATTACAGACCCTCATGCTCCAATCCATCTACGTGTGTATGACAAGGACACATTCAGCTTGGACGACAAAATGGGGGATGCTGACTTTGTCATAGGTCCATTCGTCGAAGCAGTGAAGATGCACTTGGAAGGTCTCCCCAACAATACTATAGTTACAAAAGTGTTGCCTAGCAGACAAAACTGCTTAGCCGAAGAGAGTCACATTGTCTGGAAGGATGGCAAAGTTGTGCAAAACATGGTTCTTAGACTAAGAAATGTTGAGTGTGGGGAGGTGGAGCTCCAGTTGACTTGGATTGACATTCCTGGTTCAAGGCATCTCTAG 498 0.4478 MENLLGLLRINVQKGVNLAVRDVVSSDPYVVIKMGKQKLKTRVIKKNLNPEWNDELTLSITDPHAPIHLRVYDKDTFSLDDKMGDADFVIGPFVEAVKMHLEGLPNNTIVTKVLPSRQNCLAEESHIVWKDGKVVQNMVLRLRNVECGEVELQLTWIDIPGSRHL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02262 165 SMART C2_3c 7 102 IPR000008 -
Spst1g02262 165 Pfam C2 domain 6 89 IPR000008 -
Spst1g02262 165 CDD C2_ArfGAP 5 148 - -
Spst1g02262 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 157 IPR035892 -
Spst1g02262 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Spst1g02262 165 Gene3D C2 domain 4 161 IPR035892 -
Spst1g02262 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02262 Spst-Chr1 31260998 31262761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02262 38 165 C2H2 Transcription Factor Family AT1G70790 58.462 1.88e-50 157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02262 1 31260998 31262761 Spst4g02832 4 67990310 67992324 ECH
Spst1g02262 1 31260998 31262761 Spst1g02262 1 31260998 31262761 ECH
Spst3g02276 3 65789194 65790539 Spst1g02262 1 31260998 31262761 ECH
Spst2g01956 2 18611799 18612991 Spst1g02262 1 31260998 31262761 ECH