Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01626 ATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACCCAACTGGTCACAACAGCAACCTAATCAGCCAGCAGGAATTGGCACCCAGAATTCACAGATTCTACCATCTTTGCAGCCGCCACCTTCATCGGTGGCGGCTGTTATCGGAGGTGGTGGTGGTTATCAAGGCTCTATTAGACCAGGATCCATGGCTGATCGAGCAAGGATGGCAAAGATACACCAACCTGACGCAGCACTCAAATGTCCACGATGTGATTCTTCCAACACCAAGTTTTGCTACTACAACAACTATAGCCTTTCACAGCCTCGCCACTTTTGCAAGACTTGCCGTCGTTACTGGACCAGAGGAGGTGCACTCAGAAACGTGCCAGTTGGAGGTGGCTGTAGAAGGAACAAAAGAAACAAAGGAAGTAGCGGTAGATCAAAGTCTCCTATGAAACCCTCAACAGGTTCTACCTCTGCAAGTGCTAATTCTTCTTCTAGTGGCTGCACCACTGATCATGTGATGATGACTCACTTGCCAACTCCAACACAAACTCAATTTCCATTTTTAACCTCTTTGCATCATTATAATAGTGACTACGTTTCTGGGGGCATTGGATCTCATTTTGGGGAGATCACGACACCTTTGGTGGCTAGAAATGGCAGTGATGTTGAGTTCCAAATTGGCACTACTTCAGCTTCATCACTTGGTAATAGTGGTGGGGCTATGCTGTCAAATGGCCTTGGTGAGCAATGGCGGTTGAACAATCTGCAACAAGTTCAACATCAGTTCCCTTTCTTGGGCAATAATTTGGAGCCACAAGCTGGGGTGTTTCAGTTTGGTGGTGGAGAAAATAATAATGCCGAACCGCCAAGTTTTGCAAAGGATGGAAGCCGGTTTAATATTCGTTCTAAAATGGATTCTATTTCTAGTCTAAGTGGAATAATGCCTCAGCTTAACACGATAAAGGTGGAAGAAAATCAAGGTTTCAGTTTGCCAAAAAATCTCTTGATGGGTAATTCGGGAAATGATGTACTTTGGAATGGAAGTGGAAATGCATGGAGTGAACTTCCTTGTTTCACTCCTTCACATAATCAGTTGTCGTGA 1089 0.45 MVFPSLPIYLDPPNWSQQQPNQPAGIGTQNSQILPSLQPPPSSVAAVIGGGGGYQGSIRPGSMADRARMAKIHQPDAALKCPRCDSSNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRNKGSSGRSKSPMKPSTGSTSASANSSSSGCTTDHVMMTHLPTPTQTQFPFLTSLHHYNSDYVSGGIGSHFGEITTPLVARNGSDVEFQIGTTSASSLGNSGGAMLSNGLGEQWRLNNLQQVQHQFPFLGNNLEPQAGVFQFGGGENNNAEPPSFAKDGSRFNIRSKMDSISSLSGIMPQLNTIKVEENQGFSLPKNLLMGNSGNDVLWNGSGNAWSELPCFTPSHNQLS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01626 362 MobiDBLite consensus disorder prediction 140 170 - -
Spst1g01626 362 MobiDBLite consensus disorder prediction 12 39 - -
Spst1g01626 362 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 69 240 IPR045174 GO:0003700|GO:0006355
Spst1g01626 362 Pfam Dof domain, zinc finger 77 133 IPR003851 GO:0003677|GO:0006355
Spst1g01626 362 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677|GO:0006355
Spst1g01626 362 MobiDBLite consensus disorder prediction 12 42 - -
Spst1g01626 362 MobiDBLite consensus disorder prediction 123 170 - -
Spst1g01626 362 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01626 Spst-Chr1 20087123 20088466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01626 1 266 C2C2-Dof Transcription Factor Family AT2G37590 39.286 2.91e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst1g01626 zf-Dof 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01626 - - vun:114185583 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01626 1 20087123 20088466 Spst1g01626 1 20087123 20088466 ECH