Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01535 ATGTTCCCTTCCTCTAATTATACCTCCTCAGGCTCTTACCCTCGTTTCCCTCCTTCATCTTCTTCTTCTTCTTTCACTTTTCTTCACCCTGAAAATTCTTCGTCTAGTAACACCTTTCTTCATGATCCACTTGCTGTTACCTTCATACCAACTCATTATCATGCTCCAATACCTGAAACGCTAGCCAATTGGGCAGTTGCAGATTGTGCTGCTGCTGCAATGCTCAATCAGGATCTCAGTGGTGCCCTTTATGGCATCACCAAAAAACCAGCGAAGAAAACAACCAAGAAAGACAGGCACAGCAAGATTTACACATCTCAGGGCTTGAGGGACCGAAGGGTGAGACTGTCCATTGAGATCGCACGCAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGATAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCCAAGAAGGCAATTAAGGAGCTAACTCAAAGCAAGCGCAGTGTGGATAGCTTCGAATTCTCCTCATCTTCGGATGGTGAAGTGGTTTCTGTGATCCACCAAGACCAACAAAAACAACAACAACAGCAAGGGGTAGACTTGGAAGAAGGGAAGTTGAAAGGACCTGCTTATCGTGTGAAAGCAAAGATGAAGGAATCAAGGGAAAAAGCACGGGCAAGAGCAAGGGAAAGGACTAGTAGCAAGATATTGTGCAGTGGAGAAGGGAAGGTGCAAGAGTTGAAGAAAAAGTGCCCTGCAACTGAAAATCATCAAATCTTGAACCAATTAAGGTCACCCCTTCAACCTCATTCTCAAGAAGAGGGTGAAGGAGTGCCAAGAGGTGATGACTTCAACGTTATTGAGGAATCCATTGTAATCAAGAGAAAGTTGAAACACTCTCTGATCTCTTCCATTCATCACCAAAACGTTGTGGCTCCTAAGGAAGCAAGTCTAAACAACACTGACTACCACTCCTTCCAAAATTGGTCGCCAAATTGGGAAGTTAATAATGCTGCCAATGGACGCTCCACCTTTTGTGCAATAGCCAGCACGAATTTATCAACAGGGCTTCAAATTTTTGGAAAATCTTGGGAGGAGTGCATCAATCCTCATCCAACCTAA 1098 0.4426 MFPSSNYTSSGSYPRFPPSSSSSSFTFLHPENSSSSNTFLHDPLAVTFIPTHYHAPIPETLANWAVADCAAAAMLNQDLSGALYGITKKPAKKTTKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTQSKRSVDSFEFSSSSDGEVVSVIHQDQQKQQQQQGVDLEEGKLKGPAYRVKAKMKESREKARARARERTSSKILCSGEGKVQELKKKCPATENHQILNQLRSPLQPHSQEEGEGVPRGDDFNVIEESIVIKRKLKHSLISSIHHQNVVAPKEASLNNTDYHSFQNWSPNWEVNNAANGRSTFCAIASTNLSTGLQIFGKSWEECINPHPT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01535 365 ProSiteProfiles TCP domain profile. 96 154 IPR017887 -
Spst1g01535 365 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 88 329 IPR005333 GO:0003700
Spst1g01535 365 ProSiteProfiles R domain profile. 210 227 IPR017888 -
Spst1g01535 365 Pfam TCP family transcription factor 94 227 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01535 Spst-Chr1 19168775 19169967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01535 50 158 TCP Transcription Factor Family AT1G67260 56.881 4.48e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst1g01535 TCP 1e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01535 1 19168775 19169967 Spst3g04843 3 100163429 100164941 ECH
Spst1g01535 1 19168775 19169967 Spst1g01535 1 19168775 19169967 ECH
Spst9g02441 9 57690725 57691792 Spst1g01535 1 19168775 19169967 ECH