Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01472 ATGGGTTCAGTTTGTTGCTGTTTTAATGTTGATGATTTTGAAGATTATATGAATCCTAATAGTCCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTTCTACAGAACTTTTTGACTGTGTATGCATCAATATTCCGAAGAGGGGAAGTACATGCGATTCCTTCATCTACACAAGGCACAGCATCTATGACTTCTACTGCTTCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCTTTCACAGCGTGATGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGAAGTAGATACTGACTCAGAATCTTTAAACTCGGGTGGTAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATACCGGAAGTCATCTATGAGACTTTCATCAGCAAAACTTACAACTGGAACTAGGGTTGTCGATTCATCATTGGAAGTGGAGGATGTCTGTCCGACATGTCTTGATGAATACACTGAAGAAAATCCAAAGATAGTAACAAAGTGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGGAGATGGTATTCGATGAAGCGACTTAA 678 0.4056 MGSVCCCFNVDDFEDYMNPNSPVYRNCMCLSCFLQNFLTVYASIFRRGEVHAIPSSTQGTASMTSTASLDNSLSDMYRSPPRPLPYDADPRFFLSQRDGLVSRREKGSSHLNEESEPLRGEVDTDSESLNSGGKWNDTSEDGSKEYRKSSMRLSSAKLTTGTRVVDSSLEVEDVCPTCLDEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKEMVFDEAT 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01472 225 SMART ring_2 175 215 IPR001841 -
Spst1g01472 225 Pfam RING-H2 zinc finger domain 170 215 IPR024766 GO:0008270
Spst1g01472 225 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 57 223 - -
Spst1g01472 225 SUPERFAMILY RING/U-box 169 222 - -
Spst1g01472 225 MobiDBLite consensus disorder prediction 103 123 - -
Spst1g01472 225 CDD RING-H2_AIRP1-like 172 219 - -
Spst1g01472 225 MobiDBLite consensus disorder prediction 103 153 - -
Spst1g01472 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 225 IPR013083 -
Spst1g01472 225 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01472 Spst-Chr1 18400385 18406057 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01472 1 18400385 18406057 Spst1g01472 1 18400385 18406057 ECH