Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01342 ATGTCAGAGGTAAAAGACCCAACGATCAAGCTCTTCGGGAAGACGATCCCGGTGTCGGAGATTCTGAGGGGATCCGCTGAAGCTCCGGCTTCGTCTTCCGACGACGTTGTTGATGACAGTGTTGAACAGAGCCATGCTTCTTCCTCCAACTCCTCGAGGGAGTCTCATACGCGAGAGGATGGTGTTGTTGACAAGGACTCACTGGGAGAAAAACCAGCTGATGATAATAAGGAAGATGGAGCCCCAACCCAATCATCGGAAGAGGTTAGCAATCCAGATACCACCTCTGGAACCTGTGAAGAATCCATTACTCTACCCATCAACAAGGACACAACAACATTAAAAACATCAAAGACTGAAGAAGAACAAAGTGAGACAAGTAAATCACAGGATAAGAACCTCAAAAAGCCAGACAAAATACTACCATGTCCCCGCTGTAATAGTATGGACACCAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCCCGTCATTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGGGGGACTATGAGGAACGTTCCTGTCGGTGCTGGTCGCAGGAAGAACAAGAGTTCTACTTCTCTCTACCGCCAGATAACTGTTTCTGAAGTTGCACTCCAGAATTCTCAAATTGATTTGACAAATGGAGCATATCATCCTTCCTTGAAATGCAATGGTACAGTCCTTACATTTGGATCTGATCCACCCTTGTGTGAATCAATGTCATCGGTTTTGAACCTTGCGGACAAAACCGTACACAATTTTGCAAGAAATGGATTTCATAAACCTGAAGAACTAAAAATTCCTGTTCCACATGCCAGTGGAGAAAAAGGGGATGATCAATCCAATAACTCTTCAGTTACCTCCACAAAGTCAGTGGAAGGTGCAAGCACCAATGCAACCCAAGAACAAGCTACGCAGAACTGTCATAGCTTCCCACCACAGGTTCCCTACTTTACTGGTACCTCTTGGCCTATTCCATGGAGTCCAGTGCAGTGGAGTTCTCCAGTACCACCACCTGCCTTTTGTCCCCCTGGATTTACCATGCCATTCTATCCTGCAGCAGCTTATTGGGGTTGTGCTGTGTCAGGTGCATGGAGCATTCCATGGATAGCGCAACCATCATCACCACCGACGGGTGCAACATCTAACTCTGGCCATAACTCTCCAACCTTGGGGAAACATTCAAGGGAAGACCACATTCCCAAATCAAATGAATCGGGTGGTGATGAGGATGGACATAGCAAAGAAAAGTGTCTGTGGGTTCCAAAAACTCTAAGGATTGATGATTCAGGAGAAGCAGCTAGAAGCACTATATGGACAACACTGGGGATTAAAAATGACAAGGTTGACTCAGTTCCTAGGGAAACACTCTTTAAAGGCTTCCCTTCAAAGCATAATGAGAAAAACCATTCAATGCAAGCCTCACCGGTCTTGCAAGCTAATCCAGCTGCATTGTCAAGGTCACTTAACTTTCATGAGACCTCATAA 1503 0.4551 MSEVKDPTIKLFGKTIPVSEILRGSAEAPASSSDDVVDDSVEQSHASSSNSSRESHTREDGVVDKDSLGEKPADDNKEDGAPTQSSEEVSNPDTTSGTCEESITLPINKDTTTLKTSKTEEEQSETSKSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSTSLYRQITVSEVALQNSQIDLTNGAYHPSLKCNGTVLTFGSDPPLCESMSSVLNLADKTVHNFARNGFHKPEELKIPVPHASGEKGDDQSNNSSVTSTKSVEGASTNATQEQATQNCHSFPPQVPYFTGTSWPIPWSPVQWSSPVPPPAFCPPGFTMPFYPAAAYWGCAVSGAWSIPWIAQPSSPPTGATSNSGHNSPTLGKHSREDHIPKSNESGGDEDGHSKEKCLWVPKTLRIDDSGEAARSTIWTTLGIKNDKVDSVPRETLFKGFPSKHNEKNHSMQASPVLQANPAALSRSLNFHETS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01342 500 Pfam Dof domain, zinc finger 138 195 IPR003851 GO:0003677|GO:0006355
Spst1g01342 500 MobiDBLite consensus disorder prediction 379 420 - -
Spst1g01342 500 MobiDBLite consensus disorder prediction 396 420 - -
Spst1g01342 500 MobiDBLite consensus disorder prediction 267 316 - -
Spst1g01342 500 MobiDBLite consensus disorder prediction 379 395 - -
Spst1g01342 500 MobiDBLite consensus disorder prediction 83 113 - -
Spst1g01342 500 MobiDBLite consensus disorder prediction 1 140 - -
Spst1g01342 500 MobiDBLite consensus disorder prediction 52 82 - -
Spst1g01342 500 PANTHER CYCLIC DOF FACTOR 2 1 500 IPR045174 GO:0003700|GO:0006355
Spst1g01342 500 MobiDBLite consensus disorder prediction 463 500 - -
Spst1g01342 500 MobiDBLite consensus disorder prediction 114 139 - -
Spst1g01342 500 MobiDBLite consensus disorder prediction 472 500 - -
Spst1g01342 500 ProSiteProfiles Zinc finger Dof-type profile. 141 195 IPR003851 GO:0003677|GO:0006355
Spst1g01342 500 ProSitePatterns Zinc finger Dof-type signature. 143 179 IPR003851 GO:0003677|GO:0006355
Spst1g01342 500 MobiDBLite consensus disorder prediction 281 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01342 Spst-Chr1 16897335 16900311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01342 4 500 C2C2-Dof Transcription Factor Family AT5G39660 42.639 1.51e-104 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst1g01342 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01342 - - gmx:100788247 760.37