Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00617 ATGGACGCTGACATTGTCGAGATTCCATCTCCGGGGACTAACAACACTTCCTCTTCGGAGAAGCAGAAAGAGGTCTTAAGGGATGCTGTGATCGGCATAGATGACAACGATGATTCTGCTGATTTAGAAGTAATTGGTGACAAAGTTACTAAAGTTGACAAGGGGAAGGCGATAGCAACCATTCATGATGATCATCAAAATATGGAATTGTTTGATGATGATAAATCTGGATCAGGTGATGGGCATAATTCTGACGGCTCATATGATGATGATGATGATGACTACAGTGATTTGTTTTCAGATGATTTCATCGACGCCGATAAATATGCTGAAATACAGATGCATCTTGATAAAGTGGATTTACCTTCTGGAATTGAGGTACCCATTCCTTGGTTGGCGGAGTTTGATCTAGGTTCGAAGAAGACAAACAATGATTCGTTGTCTCCTTGGTCTGGTGCCAACAATTCTCAAGCGACTGATTCATCGCAGCCGTCATTAATATTAGAGCCTACTAACCTTGAAATTCAAGGACTTTCTGCAGGACCTTCTGCGACTAAAAGGAAGGCTGACACTTTTTATGCTAGCGATGCCTCCGTTTTCGAGGCCAAGAAACGGGCACTAGATGAGCTACTAAAATGGGGAGGATTTACAGATTTTAAGACAGAAGGTAAAAGTGACACTCCATATCATTCACCTTCTGTTGGATCTTCGTTTCATTTTCCTAGAGCTGGATTTACTAGTGATAAGTGGTCGAAGAAAGGTATTCAATTTCTAGAAGTCCCTGAAGCTGTACTAAAATCAAGTTTGGCTGGTCCCTCTGTTCCTTTTCATGTCAATTCCGATATATTGTTTGATAACCCTTGGTTTAATGATTTTGTGGGAGATGAAAACAATGAAGCAGCTTCCAATAGTACTGTTGCTACAATATCCGATGAAGCCAGAGATGAAATTTTGAGGAAATTTCATAACTTCAAACAATTTGACGTCATTGAAGACACTTCAGACCACTACTATGTTGAAGCTGACTTATCCATGCAACAACATTCAAAGAATCGTGCAAAAAGAATCCAGGAAGAGTGGAAGTCATTGGAGAAGGATTTACCGGATTCGATATTTATCAGAGTTTATGAATCAAGAATTGATCTTTTGAGGGCAGTAATTATTGGAGCAGATGGAACGCCTTATCATGATGGCCTTTTCTTTTTTGATGTTTTGTTCCCAAGTAACTATCCCAATGTACCCCCGGAAGTCCATTACCACTCTTATGGGGTTCGGCTCAACCCAAATTTGTATTATTGTGGCAAAGTTTGCCTTAGTCTGCTCAACACCTGGTCCAGCCGTTATAAGAATGAGAAGTGGGTTCCGGGTGTTTCAACAGTTTTACAGATTCTGGTCTCTATACAGGGTCTAATCTTGAATTCGGAGCCATACTTTAATGAGCCGTCGAATGCCCGTCTCAGAGGTTCAAAAGAGGCTGAAGATCATTCTTTATACTACAATGAGACCACATTCATCTTATCATTGAGGACAATGGTGCATGTCATGAGAAGAACTCCAAAAAATTTTGAGGACTTCGTGGCTGGGCACTTCTGCAGCCGAGCTCATGATATTCTGGTGGCATGCAAAGCATACATGGATGGTGCTCAAGTTGGTTGTTTGGCCCCTGGTGGGGTGCAGGATGTTGATCAAGGTGACAAGAGCTCCTCAAAACACTTTAAGAAATCCTTAGCTGCATATGTGAATATGCTTATTCCAGAGTTCACGAAAATTGGGGCTAAGGACTGTGACAAAGTCTTTCCACCAAAAACGGTGGTTGAAGATCCGTTGAAAGAAATGCCTCAGCCTGCTGCAATTCCTGATGAAGATGCTTGA 1872 0.4151 MDADIVEIPSPGTNNTSSSEKQKEVLRDAVIGIDDNDDSADLEVIGDKVTKVDKGKAIATIHDDHQNMELFDDDKSGSGDGHNSDGSYDDDDDDYSDLFSDDFIDADKYAEIQMHLDKVDLPSGIEVPIPWLAEFDLGSKKTNNDSLSPWSGANNSQATDSSQPSLILEPTNLEIQGLSAGPSATKRKADTFYASDASVFEAKKRALDELLKWGGFTDFKTEGKSDTPYHSPSVGSSFHFPRAGFTSDKWSKKGIQFLEVPEAVLKSSLAGPSVPFHVNSDILFDNPWFNDFVGDENNEAASNSTVATISDEARDEILRKFHNFKQFDVIEDTSDHYYVEADLSMQQHSKNRAKRIQEEWKSLEKDLPDSIFIRVYESRIDLLRAVIIGADGTPYHDGLFFFDVLFPSNYPNVPPEVHYHSYGVRLNPNLYYCGKVCLSLLNTWSSRYKNEKWVPGVSTVLQILVSIQGLILNSEPYFNEPSNARLRGSKEAEDHSLYYNETTFILSLRTMVHVMRRTPKNFEDFVAGHFCSRAHDILVACKAYMDGAQVGCLAPGGVQDVDQGDKSSSKHFKKSLAAYVNMLIPEFTKIGAKDCDKVFPPKTVVEDPLKEMPQPAAIPDEDA 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00617 623 MobiDBLite consensus disorder prediction 63 94 - -
Spst11g00617 623 CDD UBCc 354 502 IPR000608 -
Spst11g00617 623 Gene3D Ubiquitin Conjugating Enzyme 310 593 IPR016135 -
Spst11g00617 623 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 351 512 IPR000608 -
Spst11g00617 623 FunFam Probable ubiquitin-conjugating enzyme E2 23 314 591 - -
Spst11g00617 623 SUPERFAMILY UBC-like 342 518 IPR016135 -
Spst11g00617 623 MobiDBLite consensus disorder prediction 1 23 - -
Spst11g00617 623 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 91 594 - -
Spst11g00617 623 SMART ubc_7 354 511 - -
Spst11g00617 623 MobiDBLite consensus disorder prediction 63 80 - -
Spst11g00617 623 Pfam Ubiquitin-conjugating enzyme 355 487 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00617 Spst-Chr11 28320325 28324501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00617 307 603 Miscellaneous Gene Families AT2G33770 44.482 1.79e-79 268
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01186 5 17264357 17269828 Spst11g00617 11 28320325 28324501 PCT