Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00614 ATGGAATCTAAATACTTCGACTCCAATGGGGAACTCTCCCTAAAGCAAAAATCAAAATCCATTTCAGCAGAGCCAACAGTCTCTACTAGTGAAAATGATTGCTTTGATTGCAATATTTGCTTGGAATCAGCACATGACCCTGTGGTTACACTCTGTGGTCACCTTTACTGCTGGCCATGCATATACAAGTGGCTTGATGTCCAAAACTCCTCTGTTGAACCAGACCAGCAGCAGACATGCCCGGTTTGTAAATCTGAGATCTCTCACACATCAGTAGTCCCCCTCTATGGCCGTGGAGCATCCAATTCAGAATCAAAAGCCAAGAAACTCCAGATGAGTCTAGGAATACCTCACAGGCCACCTCCTTACAGCTTGAATGCCATGTTAACTTCTGCTCGTACACCGGCACATTCAGGCCAGCAACTGCGTCCAAGTCATTTCCAGTCACAGTCAAGACCATTTCCTTATCAGCAGTACTTCCCTGACCTCTATGGAAGTTATGGCACCACTGGATGGCCTTATCTTGGAGGTGCTGGAGGTGCTGCTATGACTAGTTTCTTCAATCCTATGATTGGTATGTTTGGGGAGATGGTCTTGACAAGAATTTTTGGGGTATCAGATGCAAACTTGTTTTCTTACCCTCATAATGGAAATGGCACTCCTAGAATGAGAAGGCAAGAAATGCGGATTGACAAGTCTTTGAACAGACTTTCCATCTTTCTCCTATGTTGTATAGTTTTGTGTCTTCTCTTATTTTGA 759 0.4401 MESKYFDSNGELSLKQKSKSISAEPTVSTSENDCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLDVQNSSVEPDQQQTCPVCKSEISHTSVVPLYGRGASNSESKAKKLQMSLGIPHRPPPYSLNAMLTSARTPAHSGQQLRPSHFQSQSRPFPYQQYFPDLYGSYGTTGWPYLGGAGGAAMTSFFNPMIGMFGEMVLTRIFGVSDANLFSYPHNGNGTPRMRRQEMRIDKSLNRLSIFLLCCIVLCLLLF 252
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00614 252 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Spst11g00614 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 150 IPR013083 -
Spst11g00614 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 14 249 IPR045103 GO:0005783|GO:0006511|GO:0061630
Spst11g00614 252 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Spst11g00614 252 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Spst11g00614 252 FunFam E3 ubiquitin-protein ligase RMA1H1 10 104 - -
Spst11g00614 252 CDD RING-HC_AtRMA-like 35 85 - -
Spst11g00614 252 SMART ring_2 37 83 IPR001841 -
Spst11g00614 252 SUPERFAMILY RING/U-box 33 96 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst11g00614 Spst-Chr11 28277583 28278341 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00614 2 238 C3H Transcription Factor Family AT4G27470 45.041 1.03e-55 177