Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst11g00614 | ATGGAATCTAAATACTTCGACTCCAATGGGGAACTCTCCCTAAAGCAAAAATCAAAATCCATTTCAGCAGAGCCAACAGTCTCTACTAGTGAAAATGATTGCTTTGATTGCAATATTTGCTTGGAATCAGCACATGACCCTGTGGTTACACTCTGTGGTCACCTTTACTGCTGGCCATGCATATACAAGTGGCTTGATGTCCAAAACTCCTCTGTTGAACCAGACCAGCAGCAGACATGCCCGGTTTGTAAATCTGAGATCTCTCACACATCAGTAGTCCCCCTCTATGGCCGTGGAGCATCCAATTCAGAATCAAAAGCCAAGAAACTCCAGATGAGTCTAGGAATACCTCACAGGCCACCTCCTTACAGCTTGAATGCCATGTTAACTTCTGCTCGTACACCGGCACATTCAGGCCAGCAACTGCGTCCAAGTCATTTCCAGTCACAGTCAAGACCATTTCCTTATCAGCAGTACTTCCCTGACCTCTATGGAAGTTATGGCACCACTGGATGGCCTTATCTTGGAGGTGCTGGAGGTGCTGCTATGACTAGTTTCTTCAATCCTATGATTGGTATGTTTGGGGAGATGGTCTTGACAAGAATTTTTGGGGTATCAGATGCAAACTTGTTTTCTTACCCTCATAATGGAAATGGCACTCCTAGAATGAGAAGGCAAGAAATGCGGATTGACAAGTCTTTGAACAGACTTTCCATCTTTCTCCTATGTTGTATAGTTTTGTGTCTTCTCTTATTTTGA | 759 | 0.4401 | MESKYFDSNGELSLKQKSKSISAEPTVSTSENDCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLDVQNSSVEPDQQQTCPVCKSEISHTSVVPLYGRGASNSESKAKKLQMSLGIPHRPPPYSLNAMLTSARTPAHSGQQLRPSHFQSQSRPFPYQQYFPDLYGSYGTTGWPYLGGAGGAAMTSFFNPMIGMFGEMVLTRIFGVSDANLFSYPHNGNGTPRMRRQEMRIDKSLNRLSIFLLCCIVLCLLLF | 252 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst11g00614 | 252 | Pfam | Zinc finger, C3HC4 type (RING finger) | 37 | 83 | IPR018957 | GO:0046872 | |
Spst11g00614 | 252 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 150 | IPR013083 | - | |
Spst11g00614 | 252 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 14 | 249 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Spst11g00614 | 252 | ProSitePatterns | Zinc finger RING-type signature. | 52 | 61 | IPR017907 | - | |
Spst11g00614 | 252 | ProSiteProfiles | Zinc finger RING-type profile. | 37 | 84 | IPR001841 | - | |
Spst11g00614 | 252 | FunFam | E3 ubiquitin-protein ligase RMA1H1 | 10 | 104 | - | - | |
Spst11g00614 | 252 | CDD | RING-HC_AtRMA-like | 35 | 85 | - | - | |
Spst11g00614 | 252 | SMART | ring_2 | 37 | 83 | IPR001841 | - | |
Spst11g00614 | 252 | SUPERFAMILY | RING/U-box | 33 | 96 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst11g00614 | Spst-Chr11 | 28277583 | 28278341 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst11g00614 | 2 | 238 | C3H Transcription Factor Family | AT4G27470 | 45.041 | 1.03e-55 | 177 |