Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00513 ATGGCATCTAAAACACTAGCTTCGATCATTCTTCTCTTATCCCTTTTCACGTTCTCTTCCTCACACCCTGACAATGGTGGCATTGCTGTGTACTGGGGCCAAGACGGTCGAGAAGGCGATCTGACAACAACATGTGACAGTGGAAACTACGCTATTGTGCTTCTCGCTTTTCTCCACAAGTTCGGTGCAGGGAGAACCCCAGAATGGAACTTCGCTGGTCACTGTGACAACGGTGCCATGAAAAAGTGCACTGAACTAGAGTCCGAGATAAAACACTGCCAGGATAACGGCATCAAAGTGCTCCTTTCAATCGGGGGATCCCCGGACTATTCAAACTACTCCCTGAGCTCGGCGGAGGACGCAAAGAACGTTGCCAACTACCTCTACACCAACTTCCTCAGCGGCCAATTCGGTCCACTGGGAAGCGTCAAGCTCGACGGCATCGACTTCGACATCGAAGTCACGGAGAATCACTGGGACGACCTTGCCAGGGAACTCGACTACTTCCGGCAAACCACGGGGCGTTACTTTTACTTGGCCGCAGCCCCTCAGTGCCCCACAAACCCAATCTACTATCTTGGCAAAGCCATCGCCACCAAACTCTTCGACTACATCTTCGTTCAGTGCTACAATAACCCCGGTTGCTCCTACGTAAGTGGCACCAACGCCCTCTTGAACTCCTGGGACACGTGGGTGGGCTTGGTGGCCTCCAACAACTCGCTCTTCGTGGGTTTGCCGGCATCGACCAGCGCCGGAAACGGTTTCATTCCGGCGGAGGTGATGAACGGTGAGGTTCTTCCGTACGCGAAGACAGCGTCGAACTACGAGGGAGTGATGCTGTGGAACAGATACCACGATGTTCTGAATGGATACAGCGATCAGATTCTCCCCAACGTGATTAAATCCAATTTGCTGATTCGTCTCAACGTAGGTTAG 936 0.5256 MASKTLASIILLLSLFTFSSSHPDNGGIAVYWGQDGREGDLTTTCDSGNYAIVLLAFLHKFGAGRTPEWNFAGHCDNGAMKKCTELESEIKHCQDNGIKVLLSIGGSPDYSNYSLSSAEDAKNVANYLYTNFLSGQFGPLGSVKLDGIDFDIEVTENHWDDLARELDYFRQTTGRYFYLAAAPQCPTNPIYYLGKAIATKLFDYIFVQCYNNPGCSYVSGTNALLNSWDTWVGLVASNNSLFVGLPASTSAGNGFIPAEVMNGEVLPYAKTASNYEGVMLWNRYHDVLNGYSDQILPNVIKSNLLIRLNVG 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00513 311 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 311 IPR001223 GO:0005975
Spst11g00513 311 Gene3D Glycosidases 24 306 - -
Spst11g00513 311 SUPERFAMILY (Trans)glycosidases 24 295 IPR017853 -
Spst11g00513 311 PANTHER ENDOCHITINASE 8 295 - -
Spst11g00513 311 Pfam Glycosyl hydrolases family 18 28 255 IPR001223 GO:0005975
Spst11g00513 311 FunFam Acidic endochitinase SE2 26 299 - -
Spst11g00513 311 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 145 153 IPR001579 GO:0004553|GO:0005975
Spst11g00513 311 CDD GH18_hevamine_XipI_class_III 26 297 IPR045321 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00513 Spst-Chr11 26931233 26932392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00513 1 299 Glycoside Hydrolase AT5G24090 49.675 1.75e-92 275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00513 11 26931233 26932392 Spst11g00513 11 26931233 26932392 ECH