Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00505 ATGTCGTTTTCCTCCCATGAACTCATCCTCACTAGCTCACCCGACGGCCCCATCATGGTCTATGACACGGTCAACCGCACCGCCGTGACCCGGTTCTCCGGCAGCCGATCTCCTTGCCGTGGGCTGACCATGGCGGGTCGGAGATTGTTGGCAGTCTCACACGTATCCTCAGACACTGGTGCAGGCTCCATCAATGTCTACAATTGGCACGGGTCTACTGTGTTTAGGAACTTTCCTTTGCCTGAAGCCGTTGCCCCCATCGTTGCTACATCTGATGGTACATTTCTCTTTGGTGGTGGAATCTCAGGGAGAGTTTTATCCCTTTCAGGTTCTTCTGGGGATGTGATTAGATCAGTCGCTGCACACTCAAGTCCAGTTTCTAGTCTTCATTTGAGCGATGATGGGTCACTTGTTATTTCAGGCAGTGAAGATGGCACAATTGTTGTTGTCCCTACCTTTAAGATGGTTGTTGTTGGGGTTTCATCCGAGGAGGAGGACATGGATGACTTGATCTTGCACAAATGGAAGGCACATTCTGATTCTGTGACTGCTTTGAAGTCTGTGATGGGTACTTTGGTTTCTTGCTCATTGGACGGCACATGCAAGTTTTGGAATCTGGGAAATTGTGGGATTCTCATGAGGACTGTGACATTCCCATGTTCTATTTTTGGGGTTGTCTTGGATTCTACAGGGTCAGCATTTTACGCTGCTGGTTCAGATGGGTTTGTTTATCATGGGTTGGTGAAGGTTGAGAGTAGAAAATTACCAAATAAGGTCTGTGAGGTGAGCACCTGGCCTCAGGGTCATAGTGGGTCAATTGTGTCATTGGTTTTGGTGAATGAAGAGAGGAATTTGGTGTCTGCTGCAGAAAATGGGAGTGTGTGGATGTGGAATGTGAAGAAAGGAGAAGTCATATTGGTTTTTGGGGATGAATTGATAAACATTAGTGATATGATTGTGATGAAGGGAAATATTGGTGGATTTGGAGTTGGAAAGAGAAATAATGTTGCAGTTGGGGAAGGTAATGGGTTATTCACTTCTTCTGGTTTATGTGACCAAGAGATGATTAAGACTCTAAAGCAAATCACAGAGCTTGGGGAGATCAAGGATGTGGTGGTGCAAGATAAGAAAAAGGCCATTGACATGTTGGAATCTGCCATTGAAATGTATGAGAGACTTTTGAAGCTTATCCTTAAGGAAGCTACCAAAGCCATTGAAGAGGAAGAAGAGGATGAAGATGACAGAGAAGAGCAACAAGCAAAAGATGATAAGAAGGAAGACCATTAA 1287 0.4522 MSFSSHELILTSSPDGPIMVYDTVNRTAVTRFSGSRSPCRGLTMAGRRLLAVSHVSSDTGAGSINVYNWHGSTVFRNFPLPEAVAPIVATSDGTFLFGGGISGRVLSLSGSSGDVIRSVAAHSSPVSSLHLSDDGSLVISGSEDGTIVVVPTFKMVVVGVSSEEEDMDDLILHKWKAHSDSVTALKSVMGTLVSCSLDGTCKFWNLGNCGILMRTVTFPCSIFGVVLDSTGSAFYAAGSDGFVYHGLVKVESRKLPNKVCEVSTWPQGHSGSIVSLVLVNEERNLVSAAENGSVWMWNVKKGEVILVFGDELINISDMIVMKGNIGGFGVGKRNNVAVGEGNGLFTSSGLCDQEMIKTLKQITELGEIKDVVVQDKKKAIDMLESAIEMYERLLKLILKEATKAIEEEEEDEDDREEQQAKDDKKEDH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00505 428 Gene3D - 152 316 IPR015943 GO:0005515
Spst11g00505 428 Coils Coil 373 426 - -
Spst11g00505 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 149 IPR001680 GO:0005515
Spst11g00505 428 PANTHER WD-REPEAT PROTEIN 18 6 400 IPR045227 -
Spst11g00505 428 Pfam WD domain, G-beta repeat 115 149 IPR001680 GO:0005515
Spst11g00505 428 Pfam WD domain, G-beta repeat 172 205 IPR001680 GO:0005515
Spst11g00505 428 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Spst11g00505 428 Gene3D - 1 151 IPR015943 GO:0005515
Spst11g00505 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515
Spst11g00505 428 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 7 303 IPR011047 -
Spst11g00505 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 119 149 - -
Spst11g00505 428 MobiDBLite consensus disorder prediction 405 428 - -
Spst11g00505 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 303 - -
Spst11g00505 428 SMART WD40_4 168 205 IPR001680 GO:0005515
Spst11g00505 428 SMART WD40_4 258 298 IPR001680 GO:0005515
Spst11g00505 428 SMART WD40_4 112 151 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00505 Spst-Chr11 26840729 26842015 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00505 99 308 U-box Gene Family AT1G04510 27.523 1.76e-06 48.1