Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00498 ATGAAGATTCAGTGCAACGTGTGCGAAGTCGCGGAGGCCAAGCTCCTCTGCTGCGCTGACGAGGCCGCACTGTGCTGGGAATGCGATGAGAAGGTTCACGCCGCCAACAAGCTCGCCACCAAGCACCAGAGAGTTCCGCTTTCCCTCTCTGCTTCCCACGTGCCAAAGTGTGACATATGCCAGGAAATGGTTGGATATTTCTTCTGTTTAGAGGATCGGGCTTTGCTATGTAGGAATTGTGATGTATCTATTCACACTGCTAATGCCTGTGTCTCTGGTCATCAAAGGTTTTTGCTTACTGGTGTGAGAGTAGGCCTCGAAGCTACTGAGCGCGGTGCTTCCTCATCCTATGTCAAGTCACAGTCTGGGGAGAAAACATCTGATGCTAAATCTTCATCCATTTCTAGAAATGTTTCCTCCCTGCCCCAGCCATCAAATTTCAATGAAGTATTACCCCACCAAATGGGAGGAGTCGAGGACTTTCCACCAAACAAGGTGTCTTATGGTGGCGGTTATGCTGCTGGAAACGTCTCACAGTGGCCCATTGAAGAATTTCTTGGGTTAAATGAATTCAGTCAGTATTATAATTATATGGATGGGTCATCTAAGGCTGACAGTGGTAAACCTGGGGATTCTGATTCTTCTGTTTTGAGGTCTAGTGAAGAGGAAATGGACGATGAAGACTTCTTGGGGCGTGTTCCAGATTCATCCTGGACAGTTCCTCAGATCCCTTCCCCTCCAACAGCTTCGGGGTTGCATTGGCCGGAAGTCCCTCAATATACATCTGACAATCCTATGTTTATTCCTGACAAATGTTTTACTTCAGTGCGGCAGCACCACCATGTTCTACATAATTCTATTCATTCAAAACGGAGAAGGAACCTATAA 888 0.4707 MKIQCNVCEVAEAKLLCCADEAALCWECDEKVHAANKLATKHQRVPLSLSASHVPKCDICQEMVGYFFCLEDRALLCRNCDVSIHTANACVSGHQRFLLTGVRVGLEATERGASSSYVKSQSGEKTSDAKSSSISRNVSSLPQPSNFNEVLPHQMGGVEDFPPNKVSYGGGYAAGNVSQWPIEEFLGLNEFSQYYNYMDGSSKADSGKPGDSDSSVLRSSEEEMDDEDFLGRVPDSSWTVPQIPSPPTASGLHWPEVPQYTSDNPMFIPDKCFTSVRQHHHVLHNSIHSKRRRNL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00498 295 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Spst11g00498 295 MobiDBLite consensus disorder prediction 115 148 - -
Spst11g00498 295 CDD Bbox1_BBX-like 5 47 - -
Spst11g00498 295 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Spst11g00498 295 MobiDBLite consensus disorder prediction 201 256 - -
Spst11g00498 295 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 277 - -
Spst11g00498 295 SMART bboxneu5 52 99 IPR000315 GO:0008270
Spst11g00498 295 SMART bboxneu5 4 47 IPR000315 GO:0008270
Spst11g00498 295 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Spst11g00498 295 FunFam B-box zinc finger protein 22 1 93 - -
Spst11g00498 295 Gene3D Classic Zinc Finger 1 92 - -
Spst11g00498 295 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00498 Spst-Chr11 26807016 26810256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00498 1 295 C2C2-CO-like Transcription Factor Family AT1G78600 46.108 3.72e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Spst11g00498 zf-B_box 2.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00498 11 26807016 26810256 Spst11g00498 11 26807016 26810256 ECH