Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00497 ATGAGAAGAGTCCCCTACGCGCTACTCAAAGGAGTTTCCCCTTTGCGCTGCCACAATGCACGACGCTTGTTCGGCGCACCCCTCCCTCCGCCGCGCGAGGTGGTGGAACCCTTCTGCGACCTCTCCGACGTGGTTTCGCCCCCTCAAACCTCTCCATGGGTTCCTCAAATCCTCTCCATCCTCGATGGGTCCCCCTCCATGGAGTCCAACCTCGAATCCTTCTGCCGCCAATACCTCATAACCCTCTCCCCCTCCTTCGTCTCCCACACCCTTCGCTCCCTCTCCGACCCCGTCACCGCCACGCGCTTCTTCTCCTGGGCCGCCACACAGCCCAACTACTCCCACTCCCTCGACTGCCACGTCTCCCTCCTCCCACTCCTTCCCCCCTCCTCCCTCCCTCCCGCCCTCTCCGCCCTCCGCCGCGCCAACCTCCCAATCACCCTCCCCGCCGCCCACTCCCTCGCCAAAACCCTCGCCGCCGCCGGCCTCCTCCACGACCTCCTCTGGCTGCTCCGCGCCATGACGGCCAACAACCTCCGTCCCACCCTCCTCATCCTCAACTCCCTCCTCAACGCCCTTGTCAACGCCTCCCTCGTCGACTCCGCCGAGCGCGTGTTCAAGTCAATGCAGGAAGGCGCGTCGTCGAAACCCGACGTCGTCAGTTACAACACGCTCGTCAAAGGCTACTGCAAGGTCGGGCGAACGCGGGACGCGTTCGCCAAGCTCCGCGAAATGGAGGCTGAAAACTTGCCACCCGATGAGGTCACGTATATGACCCTGATACAGGCTTGTTACAACGAGGGTGATGTGGATTCGTGTGTGAGGCTTTTCCATGAGATGGAGGAAGATGAAGTGTTGGGAACGAAAATCCCTCCCCACGCGTATAGTTTAACAATATGTGGGTTGTGTAAGCAGGGTAAGGTTGTGGAGGGTTGTTCTGTGTTTGAGAGTATGGTTAAGAAAGGTTGTGTAGCTCATAAGGCTGTGTATACTGCCATAATTGATGGTTATGCCAAGAGCGGGAACATGGATGTAGCCATGTCGTTTTTGGAGAGGATGAAGGTGGATGGGGTTGAGCCAGACGAGGTTACTTATGGGGCTGTTGTAGGTGGTTTGTGTAAGAGTGGGAAAATGGATGAGGCCATGGGTTATTTTAGGTTTTGTAAGGGTAATGATGTGACCGTGAATGCTGTGTTTTATTCAAGTTTGATTGATGGGCTTGGGAAGGTTGGGAGGGTGGACGAGGCGGGGAGGCTGTTTGAGGAGATGGCGGAAGAGGGGTGTCCGCGGGATTCATATTGTTACAATGCTCTCATGGATGGTTTGTGCAAGAATGGGAGAGTTGATGAGGCCCTGGTGTTGTTTAGGCGAATGGAGCGAGAGGGGTGTGAGCAGACGGTTTATACGTTTACTATACTTGTTAGTGAGCTTTTCAGGGAGAGGAGGAATGAGGAGGCGTTGAAGCTGTGGGAGGAGATGATCGACAAAGGTGTCACGCCGAATGCTGCGTGTTTCAGAGCTCTTTCAATTGGGCTGTGTCTCTCGGGCAAGGTTGCCAGGGCTTGCAGGGTGTTGGATGAGCTTGCCCCTATGGGGATTGTTCTGGAGAGGGCGTATGAGGATATGATTGGTGTGCTGTGCAAGGCTGGCCGTGTGAAAGAGGCCTGCAAGTTGGCTGATGGGATTGTGGATAGGGGTAGGGAAATACCGGGAAAGGTTCGGACTGTGCTGATCAATGGCTTGAGGAAGGCTGGTAATGCGGATTTGGCGATTAAGTTAATGCACAGCAAGATTGGTATTGGGTATGACCGAATGCGTAGTGTTAAAAAGCGAGTGAAGTTCCAAACCCTTGTTGACAGATGA 1863 0.5523 MRRVPYALLKGVSPLRCHNARRLFGAPLPPPREVVEPFCDLSDVVSPPQTSPWVPQILSILDGSPSMESNLESFCRQYLITLSPSFVSHTLRSLSDPVTATRFFSWAATQPNYSHSLDCHVSLLPLLPPSSLPPALSALRRANLPITLPAAHSLAKTLAAAGLLHDLLWLLRAMTANNLRPTLLILNSLLNALVNASLVDSAERVFKSMQEGASSKPDVVSYNTLVKGYCKVGRTRDAFAKLREMEAENLPPDEVTYMTLIQACYNEGDVDSCVRLFHEMEEDEVLGTKIPPHAYSLTICGLCKQGKVVEGCSVFESMVKKGCVAHKAVYTAIIDGYAKSGNMDVAMSFLERMKVDGVEPDEVTYGAVVGGLCKSGKMDEAMGYFRFCKGNDVTVNAVFYSSLIDGLGKVGRVDEAGRLFEEMAEEGCPRDSYCYNALMDGLCKNGRVDEALVLFRRMEREGCEQTVYTFTILVSELFRERRNEEALKLWEEMIDKGVTPNAACFRALSIGLCLSGKVARACRVLDELAPMGIVLERAYEDMIGVLCKAGRVKEACKLADGIVDRGREIPGKVRTVLINGLRKAGNADLAIKLMHSKIGIGYDRMRSVKKRVKFQTLVDR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00497 620 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 294 596 - -
Spst11g00497 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Spst11g00497 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Spst11g00497 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Spst11g00497 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Spst11g00497 620 Gene3D Tetratricopeptide repeat domain 386 458 IPR011990 GO:0005515
Spst11g00497 620 Gene3D Tetratricopeptide repeat domain 317 385 IPR011990 GO:0005515
Spst11g00497 620 Gene3D Tetratricopeptide repeat domain 536 597 IPR011990 GO:0005515
Spst11g00497 620 Gene3D Tetratricopeptide repeat domain 459 532 IPR011990 GO:0005515
Spst11g00497 620 Gene3D Tetratricopeptide repeat domain 91 290 IPR011990 GO:0005515
Spst11g00497 620 Pfam PPR repeat 542 563 IPR002885 -
Spst11g00497 620 Pfam PPR repeat 294 323 IPR002885 -
Spst11g00497 620 Pfam PPR repeat 187 211 IPR002885 -
Spst11g00497 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Spst11g00497 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Spst11g00497 620 SUPERFAMILY HCP-like 374 604 - -
Spst11g00497 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Spst11g00497 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Spst11g00497 620 Pfam PPR repeat 393 423 IPR002885 -
Spst11g00497 620 Pfam PPR repeat family 431 477 IPR002885 -
Spst11g00497 620 Pfam PPR repeat family 217 265 IPR002885 -
Spst11g00497 620 Pfam PPR repeat family 329 374 IPR002885 -
Spst11g00497 620 NCBIfam pentatricopeptide repeat 255 284 IPR002885 -
Spst11g00497 620 NCBIfam pentatricopeptide repeat 298 324 IPR002885 -
Spst11g00497 620 NCBIfam pentatricopeptide repeat 363 386 IPR002885 -
Spst11g00497 620 NCBIfam pentatricopeptide repeat 187 218 IPR002885 -
Spst11g00497 620 NCBIfam pentatricopeptide repeat 400 431 IPR002885 -
Spst11g00497 620 NCBIfam pentatricopeptide repeat 220 254 IPR002885 -
Spst11g00497 620 NCBIfam pentatricopeptide repeat 433 464 IPR002885 -
Spst11g00497 620 NCBIfam pentatricopeptide repeat 329 362 IPR002885 -
Spst11g00497 620 NCBIfam pentatricopeptide repeat 468 502 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00497 Spst-Chr11 26801141 26803003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00497 307 594 Glycosyltransferase AT1G05670 29.110 2.24e-29 122