Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00470 ATGAAAGATGGTGGTAGAAAACAAGGTGCAATGTCACCATGTGCAGCATGCAAACATCTTCGTAGGAGATGTGCACAGGATTGTGTGTTCGCTCCTTATTTCCCTGCAGATGAGCCCCATAAGTTTGCCAGTGTGCACAAGGTTTTCGGGGCTAGCAATGTCAACAAAATGTTACAGGAACTTCCAGAGTACCAACGAAGTGATGCTGTTAGTTCAATGGTGTATGAAGCCAATGCAAGAGTGAGGGACCCTGTGTATGGATGTGTGGGAGCCATATCCTCTCTTCAGCAACAAGTTGATGTTTTACGAACCCAGTTGGCACTTGCACAAACAGAGGTTGTGCACATGAGAATGCAGCAGGTATCATCAACTTCCTCTGATAAACTCAAACCAGTTTCTGCAGGCTTCAATTCATCCTCTCAGAACTTGTTATCTTCTCCGTCAAGTAGACTCGCCAAGTCCCTTTTGGCTATGGACATGGTCGTTGATCAGCCAAACAATGGAGAGACCTTGTGGTCATGTTAG 525 0.4571 MKDGGRKQGAMSPCAACKHLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEYQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLRTQLALAQTEVVHMRMQQVSSTSSDKLKPVSAGFNSSSQNLLSSPSSRLAKSLLAMDMVVDQPNNGETLWSC 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00470 174 Coils Coil 92 112 - -
Spst11g00470 174 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Spst11g00470 174 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Spst11g00470 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00470 Spst-Chr11 25599823 25601873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00470 1 174 AS2 family AT1G31320 66.092 8.35e-71 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst11g00470 LOB 3.7e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00470 11 25599823 25601873 Spst11g00470 11 25599823 25601873 ECH