Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00461 ATGGCTAGAGCAGCTTGCAATCACCTTCACATGGTTCCCAATTTAGTTCATCCATTGAAGTCAACCCTCTTCACAAGCCACACTCTTTCCACCACCCGCACTCGCTTCTATGACATTCACCGAAGGCTCTTTTCTTCTTCATCCAAGATAAGCATGAGCCTCAGGGCTGGTATCGTTGGCCTCCCCAACGTTGGCAAGTCCACACTCTTCAATGCCGTTGTGGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGCACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCTCGTCTCCATGTTCTCTCTGATCTCAGCAAATCTCAGCGGTCTGTTCCAGCATCAATAGAATTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGCGAGGGGTTGGGTAACAAGTTTTTGTCGCATATTCGTGAGGTGGATTCTATACTTCAGGTTGTACGATGTTTTGAAGACAACGACATTGTTCATGTAAATGGGAAAGTTGACCCCAAGTCTGATATAGATGTTATCAACTTGGAGCTTGTTTTCTCAGATTTGGACCAGATTGAGAAAAGAATTGATAAGCTAAAGAAAGGCAAGGCAAAGGATTCACAATCTAAAGTCAAGGAAGAGGCAGAAAAGACTGCATTGGAAAAGATTCAAGAGGCGCTTATGGATGGAAAGCCTGCACGATCTGTGACCTTGACAGATTTCGAAAGGGATGCTGTAAAGCATCTCTGCTTGCTCACCATGAAACCTATTATATATGTGGCAAATGTTGCAGAAACCGATCTTGCAGATCCTGCAAACAATAATTATGTTAAAGATGTTACAAATGTTGCATCTCAGTTGCAGTCCAGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAGTTACCACTTGAAGAACGACAAGAATATTTGCAGTCTCTTGGTGTTAGTGAAAGTGGTCTTGGAAACCTAATCAGGGCAACTTATGACCTTTTGGGTCTGAGAACTTACTTTACTTCTGGTGAGAAGGAGACAAAAGCATGGACAATACTTGCAGGAATGACTGCACCTCAAGCTGCTGGGGTTATTCACTCTGACTTTGAGAAGGGTTTCATTCGAGCAGAGACAGTGTCTTATAATGATTTTGTTGCTGCTGGTTCACTTGCTGCATCACGAGAGAAAGGACTTTTGAGATCTGAAGGTAAAGACTACGTTGTACAAGAAGGAGATGTCATGTTGTTTCGGTTCAATGTTTAG 1266 0.4281 MARAACNHLHMVPNLVHPLKSTLFTSHTLSTTRTRFYDIHRRLFSSSSKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRSVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIEKRIDKLKKGKAKDSQSKVKEEAEKTALEKIQEALMDGKPARSVTLTDFERDAVKHLCLLTMKPIIYVANVAETDLADPANNNYVKDVTNVASQLQSRIVTISAQVEAELTELPLEERQEYLQSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYNDFVAAGSLAASREKGLLRSEGKDYVVQEGDVMLFRFNV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00461 421 PANTHER OBG GTPASE FAMILY 48 420 - -
Spst11g00461 421 Gene3D - 54 336 IPR027417 -
Spst11g00461 421 FunFam Ribosome-binding ATPase YchF 165 255 - -
Spst11g00461 421 Pfam Protein of unknown function (DUF933) 337 420 IPR013029 -
Spst11g00461 421 Pfam 50S ribosome-binding GTPase 56 168 IPR006073 GO:0005525
Spst11g00461 421 Gene3D - 165 255 IPR023192 -
Spst11g00461 421 NCBIfam redox-regulated ATPase YchF 52 421 IPR004396 GO:0005524|GO:0005525|GO:0016887
Spst11g00461 421 PRINTS GTP1/OBG GTP-binding protein family signature 139 157 IPR006073 GO:0005525
Spst11g00461 421 PRINTS GTP1/OBG GTP-binding protein family signature 78 96 IPR006073 GO:0005525
Spst11g00461 421 PRINTS GTP1/OBG GTP-binding protein family signature 122 137 IPR006073 GO:0005525
Spst11g00461 421 PRINTS GTP1/OBG GTP-binding protein family signature 56 76 IPR006073 GO:0005525
Spst11g00461 421 CDD YchF 56 335 IPR041706 -
Spst11g00461 421 FunFam Ribosome-binding ATPase YchF 324 420 - -
Spst11g00461 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 359 IPR027417 -
Spst11g00461 421 CDD TGS_YchF_OLA1 335 419 IPR013029 -
Spst11g00461 421 Gene3D - 100 420 IPR012675 -
Spst11g00461 421 Hamap Ribosome-binding ATPase YchF [ychF]. 53 421 IPR004396 GO:0005524|GO:0005525|GO:0016887
Spst11g00461 421 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 54 336 IPR031167 GO:0005525
Spst11g00461 421 SUPERFAMILY TGS-like 337 418 IPR012676 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00461 Spst-Chr11 25503958 25511268 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00461 11 25503958 25511268 Spst11g00461 11 25503958 25511268 ECH