Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00441 ATGGATTGTTCAGCTGCAAGAAAGACACAAAAGGCTGACCGGGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTGGGTAACGTTTTAGACCCTGACAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACAATTCAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTCAAAGAAGAATATGCTACACTAAATGAAGAATCTCGTGAGTTGACTCGGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCTGATATTGACAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACTATGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCCTTTCCAATGCCAATGGCAGTACCTCCTGGTTCAATTCCCATGCAGCCATTCCCTTACTTTGCTAATCAACATCCTGCAGTCATCCCTAACCCCTGTTCAACGTTTGTTCCTTATTTAGCCCCCAATACCATTATTGAACAACAATCAATCCAGTACGTTTCCCCTCCACTTCATCCAGGCAGTCGGTCTAATGTGTCAGAAAAACAAGAGTCCAAAAGCAAATCATCCAGGGAGAGTAAGGCTGAAAAGAATGACGATTCTAATGATGTCACTACGGACCTTGAGTTGAAGACTCCTGGGTCTTCAGCAGATGAGGATTTATCATCCGGACAAAGAAAATCTGTCAAGATGTCAAGGAGGGAAAGCAGCTGCTGCTCAGAAGGGAGTTCATTAGGTAGGCACTCTTCTGCTCGTAGCGTTCAGGATAGCTCATCAAGCAGTGCAGTTGCAAGCAGAAAGGATAATGAATGA 852 0.4296 MDCSAARKTQKADREKLRRDRLNEQFVELGNVLDPDRPKNDKATILGDTIQLLKDLTSQVSKLKEEYATLNEESRELTREKNDLREEKASLKSDIDNLNNQYQQQLRTMFPWTAMDHSVMMAPPSYPFPMPMAVPPGSIPMQPFPYFANQHPAVIPNPCSTFVPYLAPNTIIEQQSIQYVSPPLHPGSRSNVSEKQESKSKSSRESKAEKNDDSNDVTTDLELKTPGSSADEDLSSGQRKSVKMSRRESSCCSEGSSLGRHSSARSVQDSSSSSAVASRKDNE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00441 283 MobiDBLite consensus disorder prediction 220 235 - -
Spst11g00441 283 Coils Coil 5 25 - -
Spst11g00441 283 SMART finulus 12 62 IPR011598 GO:0046983
Spst11g00441 283 MobiDBLite consensus disorder prediction 248 283 - -
Spst11g00441 283 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Spst11g00441 283 CDD bHLH_AtILR3_like 11 85 - -
Spst11g00441 283 PANTHER TRANSCRIPTION FACTOR BHLH121 2 280 IPR044579 GO:0003700|GO:0006879
Spst11g00441 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 76 IPR036638 GO:0046983
Spst11g00441 283 Coils Coil 46 108 - -
Spst11g00441 283 MobiDBLite consensus disorder prediction 192 219 - -
Spst11g00441 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Spst11g00441 283 Gene3D - 5 89 IPR036638 GO:0046983
Spst11g00441 283 MobiDBLite consensus disorder prediction 180 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00441 Spst-Chr11 25114918 25116971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00441 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 66.109 1.22e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst11g00441 HLH 1e-08 No_clan