Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00438 ATGTCGGAGAGTGGGAGGAGATATGGCGGCGCCACCGCTGAGACCGGCGGAGGAGAACACGTTCTGGTGGAGGATGCCTCCGGAGACTTGTCATCATTGTCGTGGAGACTGAATGTGAAGGAGTTTCAGTTGCCACGCCAAAGTCATCATCATCATCATCATCATAATAACCCTAGTTGCTTCACTTTTCGTGGTCTTCTTCGAAAACCCAAAAAGCAAAGCAAGGTTGCAGAATACTACAAGAAACAGGAGAGGCTCCTTGAAGGGTATAATGACATGGATGCGATGACTGCAACGGGTTATTTCCCTGGAAGTCTAACACAGGATGAACTGAAGCAATTAGCAAGAAGTGAGAGAATGGCAGTTAATGTGTCAAATGCAGCTAACTTGGTGCTATTTGCAGCAAAGGTTTATACTTCCATTGAGAGCAGATCATTAGCAGTCATTGCTTCCACCATGGATTCTCTCTTGGATCTCTTGTCTGGGTTCATATTGTGGTTCACTGCCTATGCCATGAGAAACCCAAACCAGTATCACTACCCCATTGGAAAGAAAAGGATGCAACCAGTGGGTATCATTGTTTTTGCATCCGTGATGGCAACCTTGGGGTTGCAGATTTTGATTGAGTCTGGCAGACAACTTATTACGAAGTCTAAGCCTGAAATGAATCCCCGTGAGTTGAAATGGATGATTGGGATTATGGCATCTGTTACTGTAGTGAAGTTCATACTCATGGTCTACTGTCGAAGGTTTAAGAACGAAATTATCAGAGCTTATGCACAAGATCATTTTTTTGATGTTATTACCAATTCAGTTGGTTTAGTTGCTTCTGTGCTTGCTGTGAAGTACTCTTGGTGGATTGATCCAATGGGAGCAATTATTATAGCAGTTTACACTATTAACACATGGGCCAAGACAGTGATTGAGAATGTGTGGTCTCTGATTGGAAGAACAGCACCACCTGATTTTCTAGCAAAGTTGACATATCTGATATGGAATCACCATGAAGAGGTTAAGCACATAGACACTGTGAGAGCATACACCTTTGGTGCTCATTACTTTGTTGAAGTAGATATCGTGTTGCCGGAAGACATGCCTCTCAACCAAGCACACAACATAGGTGAGACATTGCAGGAGAAATTGGAGCAACTTCCTGAAGTTGAAAGAGCCTTTGTGCACATTGATTTTGAGTTTACTCACAGACCTGAGCATAAGATGATGGTATAA 1227 0.4311 MSESGRRYGGATAETGGGEHVLVEDASGDLSSLSWRLNVKEFQLPRQSHHHHHHHNNPSCFTFRGLLRKPKKQSKVAEYYKKQERLLEGYNDMDAMTATGYFPGSLTQDELKQLARSERMAVNVSNAANLVLFAAKVYTSIESRSLAVIASTMDSLLDLLSGFILWFTAYAMRNPNQYHYPIGKKRMQPVGIIVFASVMATLGLQILIESGRQLITKSKPEMNPRELKWMIGIMASVTVVKFILMVYCRRFKNEIIRAYAQDHFFDVITNSVGLVASVLAVKYSWWIDPMGAIIIAVYTINTWAKTVIENVWSLIGRTAPPDFLAKLTYLIWNHHEEVKHIDTVRAYTFGAHYFVEVDIVLPEDMPLNQAHNIGETLQEKLEQLPEVERAFVHIDFEFTHRPEHKMMV 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00438 408 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 319 395 IPR036837 -
Spst11g00438 408 Gene3D Cation efflux protein, cytoplasmic domain 319 396 IPR036837 -
Spst11g00438 408 Gene3D Cation efflux protein transmembrane domain 119 314 IPR027469 -
Spst11g00438 408 NCBIfam cation diffusion facilitator family transporter 122 395 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Spst11g00438 408 Pfam Cation efflux family 125 314 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Spst11g00438 408 SUPERFAMILY Cation efflux protein transmembrane domain-like 117 316 IPR027469 -
Spst11g00438 408 FunFam Metal tolerance protein 11 317 397 - -
Spst11g00438 408 Pfam Dimerisation domain of Zinc Transporter 321 395 IPR027470 -
Spst11g00438 408 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 39 405 - -
Spst11g00438 408 FunFam Metal tolerance protein 11 121 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00438 Spst-Chr11 25088571 25091985 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00438 11 25088571 25091985 Spst11g00438 11 25088571 25091985 ECH
Spst5g01714 5 52444541 52452535 Spst11g00438 11 25088571 25091985 PCT