Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00433 ATGTTCCCTCCGAAGAAGCCTTCAACTATGAATTCCCATGACAGAGCCATGTGTGTTCAAGGAGATTCAGGGCTTGTCCTCACCACAGACCCTAAGCCACGTCTTCGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTGCTCAGCTTGGAGGACCTGATAAGGCCACTCCTAAGACAATCATGAGGGTGATGGGTGTGAAGGGTCTTACCCTTTACCACCTCAAGAGCCACCTTCAGAAATTCAGGCTTGGAAAGCAGCCCCACAAGGATTTCAACGAACACTCTATTAAGGATGGCATGAGAGCTTCAGCTTTAGAACTTCAACGAAACATTGGCTCCTCTTCTGCCATGATTGGTCGCAACATGAACGAGATGCAAATGGAAGTGCAGAGAAGATTGCATGAACAACTAGAGGTTCAAAAAAACCTTCAGCTGAGGATTGAGGCTCAAGGAAAATACATGCAAAGTATATTGGAGAAGGCTTATCACACACTTGCTGGTGAAAACATGAACATGAAGGGTATGGGAGGAGGTCAAGGAACCCCTGACATGGGGGTCATGAAAGAATTTGGTTCTCTGAATTACCCTTCTTTTCAAGATCTTAACTTGTATGGTGGTGACCAACTTGAAGGGTTTATGACATCAAATAACAATGAGAGTATGTTTGAGGGGAAGAAGAGGCTTTGCCCCTACAGTGGAAGTGGGAAGAGTCCATTGATCTGGAGTGATGATCTCAGGCTTCAAGATTTGGGAACAGCTTCATCATGCATTAGTCCTCAAGAGGACCCTTTCAAAGGTGATCACAAGGTTCAGATTTCACCACCATCAATGGACAGTGATCCCATGTCAGAGATCTATGACACAAAGCCAGTGGTACTCCATGGAGAAACTGTAGGTAATCATCACAACAAATTTGATGCTTCCATGAAGCTGGAAAGGCCATCTCCACAAACATCACCACTTCAACCAGAGAGGAGTAGTCCTATGATCAATGCTGGTTCCGTGGCACAAGGTACAATAATCTCCCCATTTGGTTCATAA 1050 0.4505 MFPPKKPSTMNSHDRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNEHSIKDGMRASALELQRNIGSSSAMIGRNMNEMQMEVQRRLHEQLEVQKNLQLRIEAQGKYMQSILEKAYHTLAGENMNMKGMGGGQGTPDMGVMKEFGSLNYPSFQDLNLYGGDQLEGFMTSNNNESMFEGKKRLCPYSGSGKSPLIWSDDLRLQDLGTASSCISPQEDPFKGDHKVQISPPSMDSDPMSEIYDTKPVVLHGETVGNHHNKFDASMKLERPSPQTSPLQPERSSPMINAGSVAQGTIISPFGS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00433 349 Gene3D - 31 89 - -
Spst11g00433 349 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Spst11g00433 349 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Spst11g00433 349 Pfam MYB-CC type transfactor, LHEQLE motif 128 166 IPR025756 -
Spst11g00433 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 11 215 IPR044848 GO:0003700
Spst11g00433 349 FunFam Myb family transcription factor 31 89 - -
Spst11g00433 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Spst11g00433 349 MobiDBLite consensus disorder prediction 315 349 - -
Spst11g00433 349 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Spst11g00433 349 MobiDBLite consensus disorder prediction 309 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00433 Spst-Chr11 25037747 25039887 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst11g00433 Myb_DNA-binding 4.7e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00433 11 25037747 25039887 Spst11g00433 11 25037747 25039887 ECH
Spst5g01723 5 52660902 52664584 Spst11g00433 11 25037747 25039887 PCT