Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00417 ATGTCATTATCCCGTGGCCAAAAATTTTTCAAGAGGTTCTGTGTTGATGAATTCCAAATGGCAAGTCTTCCATATAGCAGCTTTCTGTCAAATGATCTCTTGCCATCCCTTGGAGCAAGAATCAACCAAGAAACAAGACTTAGAAGATGCATAGTTTCCCCTTTCGATCCACGTTACAGGGCATGGGAGATGCTTCTGATTGTCTTTGTTGTTTACTCTGCCTGGATTTGCCCCTTTGAGTTTGCCTTTCTTCCTTACAAGCAAGACACACTATTCATCATAGACAACATTGTCAATGCCTTCTTTGCCATTGACATCATTCTCACATTTTTTGTTGCATATCTTGATAACCATTCCTACCTTCTTGTTGATGATCCAAAGAAAATTGCATTAAGGTACATATCTACCTGGTTTATTTTTGATGTCTGTTCAACTGCACCATTTCAATCCATCAGCCTCCTATTCACTGATCACAGCAGTGAAATTGGCTTCAAAATTCTCAACATGCTTCGTTTGTGGCGCTTGAGACGTGTCAGTTCGCTGTTTGCAAGACTTGAGAAGGACATTCGCTTCAATTACTTCTGGACTAGGTGCTCCAAGCTCATTGCTGTGACATTGTTTGCTGTGCACTGTGCTGGATGCTTCAACTATCTGATTGCAGACAGGTACCCTGATGCGAAATCAACATGGATTGGTTCTGTGTACCCAAATTTCAAAGAAATGAGTCTTTGGGACAGATATGTGACTGCCATGTATTGGTCCATTGTTACACTTACTACCACTGGCTATGGAGATTTGCATGCTGAAAACACAAGGGAGATGTTGTTTGACATCTTCTACATGTTATTCAACTTGGGATTGACTTCATACATCATTGGAAACATGACAAACCTCGTAGTCCATTGGACAAGCCGCACCAGAAATTTTAGGGACACAGTGAGAGCAGCTTCAGAATTTGCATCAAGAAATCATCTGCCACATCACATACAGGATCAGATGTTGTCACACTTGTGTTTGAAGTTCAAGACAGAAGGAATGAAACAACAAGAGACACTGAATGGCATGCCAAAGGCAATTCGTGCAAGCATTGCATACCATCTATTCTTCCCTATTGTCCAGAGGGTCTACCTCTTCCAAGGAGTCTCTTCTGACTTTCTTCTCCATCTGGTTACAGAGATGGAGGCTGAGTATTTCCCACCAAAGGAGGATGTGATACTTCAAAATGAGTCCCCCACAGACCTTTACATGCTGGTTTCAGGGGCAGTGGATCTCATTCGCTGTGTTGATGACAATGATCAATTTCAGGTTCTGAAGAAGACCAATGCAGGGGACACGTTTGGAGAGATTGGAGTGTTATACTGTAAACCACAACCTTTCACTGTTCGAACCACTGAGCTTTCTCAAATTTTAAGACTCAGCAGAACTTCCTTGATGAACTCCTTACATGCATATCCAGAAGCAGCACAAATCGTAATGAAAAATATCTTCATGAGGTTAAAGGGGCATGAAGGCTTGGATTTTGAATATTCACCAGGGGACCCTCAAATGCATGACTGGGTCAACACAGGAGCAAGCTTTCCTGATTCATATCCAAATGATTCACATGGGGATCAAAAAGGAGATATTCATGCTACTTTACATGAAGCTCATCCTGACAGGGAAGAAAATGAACAGAACCAAGACCCTATAAGATGGAAACAGAAACCTCTTGCAGACCAACAACAAAACAAGAGTCTCCCTGACCTTGCAATGAATCATGAAAATAAGAAGGTATTAGATGAACATATCATAGAGTTTTTGGAGTCAGAAATCCCTATCAACTACCCTTTAGGAAAAATATACACAAACTCTTATTCAAGTACTTCTTCCAACCATAGAACTCAGAGAGAAACACAAAGATCGTTCAAGAAAAGAGTTACCATCCACTTTCTAAGCAAACACAAAACTACCTTACAGGAACAACATGCCAAGTTGATAATCCTACCTGATTCATTAGAAGAGCTGCTCCACATTGCAGGAGAAAAATTTGGAGGTTCCAAGCCTACAAAAGTAATTAGCAAAGAGAATGCAGAAATAGATGATATTAGTGTTATTAGAGATGGGGATCATCTATTCTTTCTTTGCAGTGACAGTGAAAGATATGAAACTAACTTGTAA 2157 0.4057 MSLSRGQKFFKRFCVDEFQMASLPYSSFLSNDLLPSLGARINQETRLRRCIVSPFDPRYRAWEMLLIVFVVYSAWICPFEFAFLPYKQDTLFIIDNIVNAFFAIDIILTFFVAYLDNHSYLLVDDPKKIALRYISTWFIFDVCSTAPFQSISLLFTDHSSEIGFKILNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCSKLIAVTLFAVHCAGCFNYLIADRYPDAKSTWIGSVYPNFKEMSLWDRYVTAMYWSIVTLTTTGYGDLHAENTREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVRAASEFASRNHLPHHIQDQMLSHLCLKFKTEGMKQQETLNGMPKAIRASIAYHLFFPIVQRVYLFQGVSSDFLLHLVTEMEAEYFPPKEDVILQNESPTDLYMLVSGAVDLIRCVDDNDQFQVLKKTNAGDTFGEIGVLYCKPQPFTVRTTELSQILRLSRTSLMNSLHAYPEAAQIVMKNIFMRLKGHEGLDFEYSPGDPQMHDWVNTGASFPDSYPNDSHGDQKGDIHATLHEAHPDREENEQNQDPIRWKQKPLADQQQNKSLPDLAMNHENKKVLDEHIIEFLESEIPINYPLGKIYTNSYSSTSSNHRTQRETQRSFKKRVTIHFLSKHKTTLQEQHAKLIILPDSLEELLHIAGEKFGGSKPTKVISKENAEIDDISVIRDGDHLFFLCSDSERYETNL 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00417 718 FunFam Potassium channel KAT2 365 503 - -
Spst11g00417 718 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst11g00417 718 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst11g00417 718 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst11g00417 718 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst11g00417 718 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst11g00417 718 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst11g00417 718 ProSiteProfiles KHA domain profile. 638 718 IPR021789 -
Spst11g00417 718 Gene3D - 60 300 - -
Spst11g00417 718 CDD CAP_ED 377 492 IPR000595 -
Spst11g00417 718 ProSiteProfiles cAMP/cGMP binding motif profile. 377 498 IPR000595 -
Spst11g00417 718 FunFam Potassium channel KAT3 61 301 - -
Spst11g00417 718 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Spst11g00417 718 MobiDBLite consensus disorder prediction 516 540 - -
Spst11g00417 718 Pfam KHA, dimerisation domain of potassium ion channel 637 706 IPR021789 -
Spst11g00417 718 Gene3D Jelly Rolls 345 507 IPR014710 -
Spst11g00417 718 SMART cnmp_10 377 496 IPR000595 -
Spst11g00417 718 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst11g00417 718 Pfam Cyclic nucleotide-binding domain 397 479 IPR000595 -
Spst11g00417 718 PANTHER POTASSIUM CHANNEL AKT1 26 500 IPR045319 GO:0005249|GO:0006813
Spst11g00417 718 SUPERFAMILY cAMP-binding domain-like 304 499 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00417 Spst-Chr11 24807055 24812054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00417 1 706 Ion Channels AT5G46240 61.765 0.0 895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00417 11 24807055 24812054 Spst11g00417 11 24807055 24812054 ECH