Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00413 ATGGACTTCAATATAGACATCATTAAGGAAGATCTGGAGCTTCAGGGCAATGTCGAAGGTGGGCTTTTGGGGCAAGGAATGTATCCGAGAAGTGAGGAAAAGGACATTGATAAAGAAGAAGCACAAGAAGGTCAAGATGATGATGATGGATATTCAGATCAAGGACCACATACATGTAGGTCAAAAAAGGATTATGATAAAGATCCAGAACTCGGTAACATTCTGGGGAGTTTACTAGAGAATCCTCAAGAGGCACAATCCCTGTTGGAAGATAGATTAAAAAAGAAGAGGAGCAAAATACTGCACACAAAGACTGGATCTGGAAAACCAATGAAAGTTTCATTTAACAAATTTGATTTTTCAAACTCATTCATATGGTTTGAATTCTACAATGTTCCATTGGCAAAAGACATCACCTTAATTTGTGATACAATTCGAGCATGGTACATTATCGGCCGCCTTGGTGGATGCAATGCTATGAATATGCAACTTTCACAGTCTCCATTGGAAGCACGACCGAGTTATGACTATATTCAGGGAGCAAATGTTGAACCAACTACATTTTACAACATTGGGAATCTTGAGGTGCAAGACAACTTGGCTCGAATATGGGTGGATATTGGAACTGTTGACCCATTGCTTCTGGATGTTTTGATAAATGCATTGACACAGATAAGCTCCGATTTTGTAGGGATCAAGCAAGTAACGTTTGGTGGATCAGAATTTGAGAGTTGGAATGAGAATTTGAAATCAGAGGAGGCAGGTTATGGTTTTTTAGGAGAAGCCAGGGTTTTGGAATGGGCTATGGGAATACCCTTAATCATTGCCCATTATGCATCTGCTTCCGGAAGAAACTATCGAATCCCATGCGGGAAGAAGCTCGTCCTCAACATCTCCGTTGGTGAGAGTGGCGATAGTCTCACCAGAGCCGCAAAGCATTGGGGTTGGGGTTTCATCATTCAAAGTAAAGCTCGCGAGCTCTCCCCTTGTTTAGTGCTTGTAGCTCTCTGCAAGCTTGGCAATCATTTGGCTGTCATGGACGTAGCACATTGCTATTTACAGGGGAATGCTGACGCTGTGGAGTTTTGTCCGTATGATTGCTACCATAATGTTTTAGCGGTATCCACTTACACATTACAAGAAGGTTGTCAGCCCAGTCGACATGGAAGCATTTCTCTCTTCAATGTTGATGTGGAGACAGGCCACCTTGACTTGGTTTTTAATGAGGAAACTGCTGGGATTTTTGACATAAAGTGGAATCCACCTGGAGGCCATGTAAATCCTTTTCTAGCTCAAGCAGATGCTAATGGATACTTGAGAATTAAAACGTTGGAGGGTTGCTGTAATGGAGTGGAAGGGGTAAATCTAAAGGAGATCACTAATGAAAAAATCAGTAACTCAATGTGCCTGTACCTGGATTGGAATCCTTCAGCCACATCCATCACAGTAGGACTTTCTGATGGCTCTGTGTCTATTATTTCTGTTCTTGAATCCAAGCTGGAAATACAAGCAGAGTGGAAGGCACATGATTTTGAACTTTGGACTACCTCCTTTGATACGCACCAACCAAATTTGGTATACACTGGCTCTGATGATTGTAAGTTCAGTTGTTGGGATTTGCGAGATAGACCTCCCAATGTGGTATTTCAGAGCTCGAAAGTCCACAAAATGGGTGTTACTTGCATCGAGAAGAGTCCACATGACCCAAATATCTTGTTGACTGGCAGTTATGACGAATTTCTTAGGGTATGGGATTTAAGATCAATCTCAAAACCCCTTAATGAGACCTCAATTAGCTTAGGGGGAGGAGTTTGGAGGGTTAAGCACCACCCCTTCATTCCAGGCTTGGTCTTGGCTGCATGTATGCACAATGGTTTCGCTATTGTTGCCATTAAAGGTGACAATGCTGAAGTATTGGAAACTTACAACAAGCATGATTCTCTTGCTTATGGAGCAGACTGGCAGAAAGGAGAAGCAAATTACTCAGGTGGGAAAACCAAACCTGTAGTGGCTACTTGCTCTTTCTATGACAAACTTGTTCGGGTGTGGAGGCCAGGAAATGATATTATCTTGTAG 2076 0.4229 MDFNIDIIKEDLELQGNVEGGLLGQGMYPRSEEKDIDKEEAQEGQDDDDGYSDQGPHTCRSKKDYDKDPELGNILGSLLENPQEAQSLLEDRLKKKRSKILHTKTGSGKPMKVSFNKFDFSNSFIWFEFYNVPLAKDITLICDTIRAWYIIGRLGGCNAMNMQLSQSPLEARPSYDYIQGANVEPTTFYNIGNLEVQDNLARIWVDIGTVDPLLLDVLINALTQISSDFVGIKQVTFGGSEFESWNENLKSEEAGYGFLGEARVLEWAMGIPLIIAHYASASGRNYRIPCGKKLVLNISVGESGDSLTRAAKHWGWGFIIQSKARELSPCLVLVALCKLGNHLAVMDVAHCYLQGNADAVEFCPYDCYHNVLAVSTYTLQEGCQPSRHGSISLFNVDVETGHLDLVFNEETAGIFDIKWNPPGGHVNPFLAQADANGYLRIKTLEGCCNGVEGVNLKEITNEKISNSMCLYLDWNPSATSITVGLSDGSVSIISVLESKLEIQAEWKAHDFELWTTSFDTHQPNLVYTGSDDCKFSCWDLRDRPPNVVFQSSKVHKMGVTCIEKSPHDPNILLTGSYDEFLRVWDLRSISKPLNETSISLGGGVWRVKHHPFIPGLVLAACMHNGFAIVAIKGDNAEVLETYNKHDSLAYGADWQKGEANYSGGKTKPVVATCSFYDKLVRVWRPGNDIIL 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00413 691 Pfam WD domain, G-beta repeat 554 585 IPR001680 GO:0005515
Spst11g00413 691 SMART WD40_4 635 684 IPR001680 GO:0005515
Spst11g00413 691 SMART WD40_4 455 494 IPR001680 GO:0005515
Spst11g00413 691 SMART WD40_4 545 585 IPR001680 GO:0005515
Spst11g00413 691 SMART WD40_4 499 539 IPR001680 GO:0005515
Spst11g00413 691 MobiDBLite consensus disorder prediction 19 67 - -
Spst11g00413 691 SUPERFAMILY WD40 repeat-like 386 685 IPR036322 GO:0005515
Spst11g00413 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 552 588 IPR001680 GO:0005515
Spst11g00413 691 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 552 588 - -
Spst11g00413 691 MobiDBLite consensus disorder prediction 50 67 - -
Spst11g00413 691 PANTHER DIPHTHINE METHYLTRANSFERASE 351 686 - -
Spst11g00413 691 ProSitePatterns Trp-Asp (WD) repeats signature. 572 586 IPR019775 -
Spst11g00413 691 Pfam Protein of unknown function (DUF3531) 111 252 IPR021920 -
Spst11g00413 691 Gene3D - 452 690 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00413 Spst-Chr11 24775383 24786356 Proximal