Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00245 ATGTCTGAAGGGTATTCCTGTGGCTGTTCCGACTCAGACTCTTCGTGCGGGTGTTGGTCCACCGCCGCCGCCGCCACCACCACCACCAGATCGGAGGCTTCAACCGAACTCAGACTCTACAGGGCCTTCATCTTCTGCGTCCCCATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTACCTCTTCTACCTCCGACCGCGAACTAGGCTCCATTGGATCACCCACTTTGGCCTTCCCAACAACGACGACAACCACAATGGCATCTCCACTCCTGATTTGGGCTTGAACAAAGAACTCAGAGAGATGCTGCCCATTATTGTCTACAAGGAAAGCTTCTCTGTCAAAGATACCCAATGCTCAGTGTGCCTTTTGGACTACCAGCCAGAGGATAGGCTGCAACAGATACCTGCATGTGGCCACACATTTCATATGAGCTGCATTGATCTTTGGCTTGCCACCCACACCACCTGCCCTCTCTGTCGCTTCTCCCTACTAACAATAGCTAAATCTTCAACACAGACATCGGATATGCAGTCACAGAACAATGAAGAAACACAAGCCATAGAATTATCTGAATCAAGATCTACTAGGCATCTAGAAACCACTGTCCTCCAAAATGTCTCTGGAGAAGTTGCAATCAGCGCTCACTGCATTGATGTTGAAGGGCAAAATGTGCAAGACGAATAA 687 0.4905 MSEGYSCGCSDSDSSCGCWSTAAAATTTTRSEASTELRLYRAFIFCVPIFFTLILLFLFYLFYLRPRTRLHWITHFGLPNNDDNHNGISTPDLGLNKELREMLPIIVYKESFSVKDTQCSVCLLDYQPEDRLQQIPACGHTFHMSCIDLWLATHTTCPLCRFSLLTIAKSSTQTSDMQSQNNEETQAIELSESRSTRHLETTVLQNVSGEVAISAHCIDVEGQNVQDE 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00245 228 CDD RING-H2_EL5-like 118 161 - -
Spst11g00245 228 PANTHER OS11G0150450 PROTEIN 87 201 - -
Spst11g00245 228 Pfam Ring finger domain 118 161 IPR001841 -
Spst11g00245 228 SMART ring_2 119 160 IPR001841 -
Spst11g00245 228 FunFam RING-H2 finger protein ATL7 84 166 - -
Spst11g00245 228 Coils Coil 222 228 - -
Spst11g00245 228 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Spst11g00245 228 SUPERFAMILY RING/U-box 103 167 - -
Spst11g00245 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 168 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00245 Spst-Chr11 8126256 8127968 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00245 11 8126256 8127968 Spst11g00245 11 8126256 8127968 ECH