Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00223 ATGGTTCGCTCCCATGGCGTCACCCTCATTAATCGCCTTGCTCGTAGATATTTCCGTGATGCCAACGACTCTGTTTATCAAGCAGTGTTCCCAAGGAGTTATAGGACATTGAACGCTAGGCCTTGCCATCCATCTAGAGTTGTAGGTGGCGTTAATTTGAAGAAATCGTTGCTATTGGGGTCGGCAAATAAATATTGGGGGGCATCTAGATTAATTCATGGCTCGGCATTATTGGCAAGAGACTATTATGATATTCTTGGTGTGAGTAAGCATGCAGGTTCTGCTGAAATAAAGAAAGCTTACTATGGGCTTGCAAAAAAGCTCCATCCAGATACAAACAAAGATGATCCTGAGGCTGAAAAGAAGTTTCAAGAAGTTTCGATAGCATATGAAGTTTTAAAGGATGAGGAAAGGCGACAACAGTATGATCAGCTTGGTCATGATGCTTACGTTAGCCAACAAAGCACCGGTTTCGGAGGCGAGGGTGGCTTCAATCCGTTTGAGCAGATATTCCGTGATCATGATTTTGTCAAGAGCTTCTTCCATCAAAATATTGGTGGAGAGGATGTGAAGACTTTTATTGAGCTATCTTTTATGGAAGCTGTACAAGGGTGCACCAAAACATTGACATTTCAAACAGATGTGCTTTGTAATGAATGTGGTGGGAGTGGTGTTCCTCCTGGTACAAGGCCTGAAACTTGTAAGCGATGTAAAGGGTCAGGAGTGTTATTTGTACAATCCGGCATATTCAGAATGGAGAGTACTTGTGGTAGCTGTAAGGGAACTGGAAAAATTGTATCGAATTTCTGCAAGTCTTGCAGAGGTGCAAAGGTTGTCAAAGGAACAAAGTCGGTCAAGTTGGATATTATGCCTGGGATAGACACCAATGAGACCATAAAAGTTTTCAGAAGTGGGGGAGCAGATCCTGATGGAGATCATCATGGCGATCTTTATGTTACTATCAAGGTTAGAGACGACCCTGTTTTTCGCAGAGAAGGATATGATATTCACGTAGATGCTGTTTTAAGTATCACTCAGGCGATTTTGGGGGGAACTATTCAAGTCCCAACTCTTGCTGGAGATGTTGTACTTAAGGTTAGGACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGGGATCAAGACAAAAAATTCTTATACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCCACAAACCTGACGCAAAGACAACGAGAGTTGATTGAAGAGTTTGCTAAGGAAGAGCAAGAGGAACTTGATAAACGGAGAACTGCTTCAGCTTCTGGTTGA 1302 0.4217 MVRSHGVTLINRLARRYFRDANDSVYQAVFPRSYRTLNARPCHPSRVVGGVNLKKSLLLGSANKYWGASRLIHGSALLARDYYDILGVSKHAGSAEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSIAYEVLKDEERRQQYDQLGHDAYVSQQSTGFGGEGGFNPFEQIFRDHDFVKSFFHQNIGGEDVKTFIELSFMEAVQGCTKTLTFQTDVLCNECGGSGVPPGTRPETCKRCKGSGVLFVQSGIFRMESTCGSCKGTGKIVSNFCKSCRGAKVVKGTKSVKLDIMPGIDTNETIKVFRSGGADPDGDHHGDLYVTIKVRDDPVFRREGYDIHVDAVLSITQAILGGTIQVPTLAGDVVLKVRTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVNIPTNLTQRQRELIEEFAKEEQEELDKRRTASASG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00223 433 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 48 424 - -
Spst11g00223 433 FunFam Chaperone protein dnaJ GFA2, mitochondrial 78 189 - -
Spst11g00223 433 Hamap Chaperone protein DnaJ [dnaJ]. 78 428 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Spst11g00223 433 Gene3D - 189 322 - -
Spst11g00223 433 Pfam DnaJ central domain 217 277 IPR001305 GO:0031072|GO:0051082
Spst11g00223 433 CDD DnaJ_zf 217 277 IPR001305 GO:0031072|GO:0051082
Spst11g00223 433 Pfam DnaJ domain 81 143 IPR001623 -
Spst11g00223 433 PRINTS DnaJ domain signature 138 157 IPR001623 -
Spst11g00223 433 PRINTS DnaJ domain signature 83 101 IPR001623 -
Spst11g00223 433 PRINTS DnaJ domain signature 101 116 IPR001623 -
Spst11g00223 433 PRINTS DnaJ domain signature 118 138 IPR001623 -
Spst11g00223 433 CDD DnaJ 81 135 IPR001623 -
Spst11g00223 433 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Spst11g00223 433 Gene3D - 209 281 - -
Spst11g00223 433 ProSiteProfiles dnaJ domain profile. 81 146 IPR001623 -
Spst11g00223 433 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 324 IPR008971 GO:0006457|GO:0051082
Spst11g00223 433 SMART dnaj_3 80 138 IPR001623 -
Spst11g00223 433 FunFam Chaperone protein dnaJ 1, mitochondrial 324 429 - -
Spst11g00223 433 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 204 280 IPR036410 -
Spst11g00223 433 Pfam DnaJ C terminal domain 193 401 IPR002939 -
Spst11g00223 433 Gene3D - 324 431 - -
Spst11g00223 433 Gene3D DnaJ domain 78 188 IPR036869 -
Spst11g00223 433 SUPERFAMILY HSP40/DnaJ peptide-binding domain 328 412 IPR008971 GO:0006457|GO:0051082
Spst11g00223 433 SUPERFAMILY Chaperone J-domain 80 182 IPR036869 -
Spst11g00223 433 FunFam Molecular chaperone DnaJ 209 282 - -
Spst11g00223 433 CDD DnaJ_C 188 404 - -
Spst11g00223 433 ProSiteProfiles Zinc finger CR-type profile. 204 282 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00223 Spst-Chr11 7693335 7698998 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00223 11 7693335 7698998 Spst11g00223 11 7693335 7698998 ECH