Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00217 ATGGTAGGAACAGAATTCAAGAAAGATTGTAATTGTGAAGATAGGATGAGTATTGTGTATAGTCATGCTGTGAAGTATTCCCAAGAGGTGACAAGAATGAACCCAGAGATGGATTCAAGTGTTGGTCAACATTGTCACCAACAGAATTCTGGGCTAATGAGGTACCGTTCTGCCCCAAGCTCATTGCTCACAAGCCTTGTGAACAATAACAATAACAACAGCATCAACATCAACAACAACAACAACATTGGTTATGTCAGTGGTGAAGCTTTCGGAAGTGACCACAATCACCACCAGCAGCAGCATTATCCTCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCCAATGATTCTGAGCCTTTCCAAGAGTTTGGAGGGAAGCCAGTGAAAGAAGAAGAAGCAGGGGAATCTATTTCACAGCCACCACAACAACCCAATGGTTACACTTATGGGTCTTCACCTCAGATATTGTACCAAACTGAGCAAGTTCAAGGCTTGCCTATGCCAAATGGTTCTTTAAGGGCTGCAGGGAATGGTTTTGATGGCTCATTCAGTGCAGTGAATTGCATGGGTTCACAAAATTCCACAGAAACCAAAATGGGTGCTTCCACCAACTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCGGGGTTTTTCTCCAATTACTCAGTTGATAATGCACTGAGAGATGTGGCGAGTTTTAGGGGCTGTGATGCATCAAATGGACGCGGTATTACATCCACTAGTGGGTTGCATAGTACTTTGAACTTCTCTTCTAGGCCATCCTCTTGCTCCACCAGGATGCCAAAGATTGCTGAAAATGGAAATGAAGGTGTGGAAGCAAATTGTGTTGAAAGTAGAAACCTGAGGAATGACAATGGCAACACTAAGTCTTACATGCCTAGTTTCACCACCGACTTCTGGGATGGTTCTGCATTCAGTGCCCCCACAACTGCTAGTAACAATGGTGAAATATCATTTTCCACTTCAAATGCAATGGATATTCAGGATGCAGATTTTGGATATCAAAAGGTTGGTCTGATCCATCATTTGAGTCTTCCCAGCTCTTCTAGTAGAATGGCTACCATGGAGAAGTTATATCAAATTCAAGGAGCTGTTCCATGTAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCAAGAAGCATTGCTGAAAGGGAAAGAAGAACACGAATTAGTGAAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCTGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTGCAGAAACAAGTTAAGATGCTCACTGACACTAGGGCAAAGTGCACGTGTGCGAGTAATCAGAAGCAATATTCTAGACCTTGTGCCTGA 1407 0.43 MVGTEFKKDCNCEDRMSIVYSHAVKYSQEVTRMNPEMDSSVGQHCHQQNSGLMRYRSAPSSLLTSLVNNNNNNSININNNNNIGYVSGEAFGSDHNHHQQQHYPPSTSSEMETMLAKLISSNDSEPFQEFGGKPVKEEEAGESISQPPQQPNGYTYGSSPQILYQTEQVQGLPMPNGSLRAAGNGFDGSFSAVNCMGSQNSTETKMGASTNCSNLIRQKSSPAGFFSNYSVDNALRDVASFRGCDASNGRGITSTSGLHSTLNFSSRPSSCSTRMPKIAENGNEGVEANCVESRNLRNDNGNTKSYMPSFTTDFWDGSAFSAPTTASNNGEISFSTSNAMDIQDADFGYQKVGLIHHLSLPSSSSRMATMEKLYQIQGAVPCKIRAKRGFATHPRSIAERERRTRISERIKKLQDLFPKSDKQTSTADMLDLAVEYIKDLQKQVKMLTDTRAKCTCASNQKQYSRPCA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00217 468 MobiDBLite consensus disorder prediction 124 159 - -
Spst11g00217 468 Gene3D - 392 463 IPR036638 GO:0046983
Spst11g00217 468 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 393 453 IPR036638 GO:0046983
Spst11g00217 468 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 58 458 - -
Spst11g00217 468 FunFam Transcription factor bHLH130 family 391 460 - -
Spst11g00217 468 CDD bHLH_AtbHLH_like 395 447 IPR045239 -
Spst11g00217 468 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 390 440 IPR011598 GO:0046983
Spst11g00217 468 MobiDBLite consensus disorder prediction 91 110 - -
Spst11g00217 468 Pfam Helix-loop-helix DNA-binding domain 396 441 IPR011598 GO:0046983
Spst11g00217 468 MobiDBLite consensus disorder prediction 143 159 - -
Spst11g00217 468 SMART finulus 396 446 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00217 Spst-Chr11 7665103 7668428 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst11g00217 HLH 6.4e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01834 5 54081585 54088351 Spst11g00217 11 7665103 7668428 ECH
Spst11g00217 11 7665103 7668428 Spst11g00217 11 7665103 7668428 ECH