Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00199 ATGAAAACGCTAACAGTTAACACTGAAGATTCTTTTTCCAGTTTGCTGGAGCTTGCATCTAATAATGATATTGAAGGTTTCAAGGTGCTTTTAGAGAAGGATTCTTCTGCGATCAACGAAGCTGGGTTCTGGTACGGGCGACAAAACGGATCGAAGCAACTTGTTCTTGAGCATCGAGCCCCTTTGATGGTTGCTGCTACATACGGTAGCATTGATGTACTCAAGCTTATTCTGACGTGCCCTGAGGCAGAGGTGAATTTCGCTTGTGGGGCGAATAAAACCACTGCCCTTCACTGCGCTGCTTCTGGTGGGTCTGCCAACGCTGTTGAAGCCGTGAAGCTGCTTTTATCCGCAGGTGCTGATGCAAGTTGCATGGATGCCTACGGAAATCGCCCTATTGATGTAATTGTTGTCCCTCCCATGCTGCAAAACATGAAAGCTGTACTTGAGGAGCTTCTTTCGGACAGTGCTTCGGATGGGTCTATTGGTGAATTCTCTGTTCCAGTGTCTGTTAATTCATCCAGCCCTGGTTCCCCGAATGGATTGCCATACTCTCCGTCGGCCTCGCCGCCTTCTCCGGTGGCGGCGAAGTTTACTGAAGCAGCTATTGGGTCTTTCTCAGAGAAGAAGGAATATCCTGTTGATCCATCCCTGCCTGATATAAAGAACAGCATATACGCCACCGACGAGTTTCGGATGTTTTCGTTCAAGGTGAGGCCTTGTTCCCGGGCCTACTCTCATGATTGGACCGAGTGCCCATTTGTTCACCCTGGAGAGAATGCAAGGAGGAGAGACCCTAGGAAGTTCCATTACAGCTGTGTGCCGTGCCCTGATTTTAGGAAAGGGGCTTGTAGGCGTGGAGACATGTGTGAATATGCGCATGGTGTGTTCGAATGCTGGCTTCACCCGGCTCAGTATCGGACACGCCTCTGCAAAGATGGTACTAGTTGTAATAGAAGAGTGTGTTTTTTTGCTCACACTGCAGAGGAGCTGCGTCCACTGTATGTGTCCACTGGATCTGCTGTCCCTTCGCCGCGATCATCGGCTTCTGCTCCTAATGTCATGGACATGGCTGCTGCGATGAGCCTTCTGCCAGGCTCGCCTTCGTCCGTCTCTTCCATGTCGCCATCCCACTTTGGGCAACCGATGTCCCCTTCTGCAAATGGCATGTCACTTTCCTCTGGTGCTTGGTCACAGCCAAATGTGCCGGCGCTTCATTTGCCTGGAAGCAATCTTCAATCTAGCCGATTGAGGTCTTCCCTTAGTGCACGAGACATTCCACCCGAAGACTTGAATGGAATGTTTGATCTTGATGGGCAGCAGCACCCTTTGAATGACTTGAGCTGTTACTTGCAGCCTCGTCCTGGTGCTGGTTCTGTGAGTCGATCTGGTCGGTCCAAGACCCTTACCCCAGCAAATTTGGAAGAGCTGTTTTCTGCTGAGATTTCATCGTCTCCACGGTATTCGGATCCAGCAGCGGCTTCTGTTTTTTCTCCAACTCATAAATCAGCTTTTCTCAATCAGTTTCAACAGCTACAGAGCATGTTATCACCAATTAATACTAATTTGCTTTCTCCCAAGGGTGTTGACCATCCTCTTTTACATGCCTCCTTTGGTGTGTCTCCTTCTGGAAGGATGTCACCAAGAAGTGTGGAACCAATCTCACCTATGAGTACACGCTTATCGGCGTTTGCTCAGCGTGAAAAACAGCAACAGCTGCGCAGTGTCAGTTCAAGGGACCTTGGTGCTAACAGTCCTGCCTCAGTTGTTGGCTCCCCTGTAAATGCTTGGTCCAAGTGGGGATCTCCTAATGGAAAAGTTGATTGGTCAGTAAATGGAGATGAACTTGGTCGTCAGATGCGAAGATCGTCCTCATTCGAGCTAAAGAACAATGGAGAAGAGCCTGATCTATCCTGGGTCCAGTCTCTGGTGAAGGAATCCCCACCTGAGATGATCAAAGAGAAGTTTGCTTCACCTCTGCCCACAGCATCAGCTGATGGACCAAATTCTAATTCTCAAATTGAAACCATTGATCATTCCGTTTTAGGAGCCTGGCTTGAGCAAATGCAACTGGATCAGCTTGTAGTCTAG 2091 0.4907 MKTLTVNTEDSFSSLLELASNNDIEGFKVLLEKDSSAINEAGFWYGRQNGSKQLVLEHRAPLMVAATYGSIDVLKLILTCPEAEVNFACGANKTTALHCAASGGSANAVEAVKLLLSAGADASCMDAYGNRPIDVIVVPPMLQNMKAVLEELLSDSASDGSIGEFSVPVSVNSSSPGSPNGLPYSPSASPPSPVAAKFTEAAIGSFSEKKEYPVDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLLPGSPSSVSSMSPSHFGQPMSPSANGMSLSSGAWSQPNVPALHLPGSNLQSSRLRSSLSARDIPPEDLNGMFDLDGQQHPLNDLSCYLQPRPGAGSVSRSGRSKTLTPANLEELFSAEISSSPRYSDPAAASVFSPTHKSAFLNQFQQLQSMLSPINTNLLSPKGVDHPLLHASFGVSPSGRMSPRSVEPISPMSTRLSAFAQREKQQQLRSVSSRDLGANSPASVVGSPVNAWSKWGSPNGKVDWSVNGDELGRQMRRSSSFELKNNGEEPDLSWVQSLVKESPPEMIKEKFASPLPTASADGPNSNSQIETIDHSVLGAWLEQMQLDQLVV 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00199 696 Gene3D - 270 333 - -
Spst11g00199 696 Gene3D - 3 158 IPR036770 -
Spst11g00199 696 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Spst11g00199 696 MobiDBLite consensus disorder prediction 372 394 - -
Spst11g00199 696 PANTHER UNKEMPT FAMILY MEMBER 17 647 IPR045234 -
Spst11g00199 696 SUPERFAMILY Ankyrin repeat 6 143 IPR036770 -
Spst11g00199 696 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Spst11g00199 696 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Spst11g00199 696 SMART ANK_2a 57 87 IPR002110 GO:0005515
Spst11g00199 696 SMART ANK_2a 92 124 IPR002110 GO:0005515
Spst11g00199 696 SMART ANK_2a 10 40 IPR002110 GO:0005515
Spst11g00199 696 Pfam Ankyrin repeats (3 copies) 19 124 IPR002110 GO:0005515
Spst11g00199 696 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Spst11g00199 696 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Spst11g00199 696 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Spst11g00199 696 SMART c3hfinal6 305 328 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00199 Spst-Chr11 7355608 7357698 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst11g00199 Ank_2 2.7e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g02063 5 56063493 56065670 Spst11g00199 11 7355608 7357698 ECH
Spst11g00199 11 7355608 7357698 Spst11g00199 11 7355608 7357698 ECH
Spst11g00199 11 7355608 7357698 Spst5g02063 5 56063493 56065670 PCT