Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00195 ATGACAAGTTCAGGCAAAATTGAAGAATTTAAAGCTGCTAAAAAGGTCACTTCAAAGAGTAAAAACAACAAAAATGTGAATGACAGACACCATGTTGCAAACGGTGCCATGCCAACTGCAGTTGAAGGGGACACGCGTAAGGGTCTTGATGGTGGGACAATGCACAATGTTTATGATTGCAACACGTCGTGGAATATATACAGGTGTCACAGAAAAAGTTCTTCTAAGATGCCAGGGAAGCCTGACACTGATGATTGGCGTGTAGAACACGGAGAGCAGATTCAGTTTCAGCCTTGGTGGCGCGCAGTGGGGGAAAATGCCTCCAAATCATCTTCAGCTGATCAGTTTAATGGTTCTCCTTCACTGCCTGGAACTGATAAGTCAGGTGCCTGTGGCGGTGGCGCTAAAGAGTACCAAAACATCAAACATGACCTGTCTTCAATCCCATTTACCATGGACAAACACCTTGCTCCAAATCTACATTCGGAATTTGTTGGTCATTCAGTTGTTTTAGCATCTCCATATTCAGATGCACAGTATGGTCAAATATTGACTACTTACAGGCAACAAGTTATGATAAACCCTCAATTGTATGGAATGCATCAGGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTTTATGTTAATGCAAAGCAGTATCATGGAATTTTGAGGCGAAGACAATCACGTGCTAAGGCCGAGCTTGAAAAGAAAGTAATTAAAAACAGAAAGCCATACCTCCATGAATCCCGGCATCTACACGCCATGAGAAGGGCAAGAGGCAACGGCGGCCGCTTTCTTAACACAAAAAAGCTCAAAAATGACAGTTCTAATGTCACTTCTGACAAAGGCAACAATAGTGGTGCAAACCCCTCCACAAACTCACTTAACACTCAACATATGCTCACCAACAATGAGAATCTAGGCTCATCAAACGTGGTTCAGGACATGCACAGAGTGCAGACTTTCAACAATGTTTACCATAATGGGAATGGTCTTACAGCACTATACCATTCACAAGTGAATAGGAAAAAGGAGGGAGACTACTTTGGTAAAGAGAGAGACCCTGTTGGGGCTTTCAAATAA 1095 0.4301 MTSSGKIEEFKAAKKVTSKSKNNKNVNDRHHVANGAMPTAVEGDTRKGLDGGTMHNVYDCNTSWNIYRCHRKSSSKMPGKPDTDDWRVEHGEQIQFQPWWRAVGENASKSSSADQFNGSPSLPGTDKSGACGGGAKEYQNIKHDLSSIPFTMDKHLAPNLHSEFVGHSVVLASPYSDAQYGQILTTYRQQVMINPQLYGMHQARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNTKKLKNDSSNVTSDKGNNSGANPSTNSLNTQHMLTNNENLGSSNVVQDMHRVQTFNNVYHNGNGLTALYHSQVNRKKEGDYFGKERDPVGAFK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00195 364 MobiDBLite consensus disorder prediction 272 302 - -
Spst11g00195 364 MobiDBLite consensus disorder prediction 8 28 - -
Spst11g00195 364 SMART cbf3 211 272 IPR001289 GO:0003700|GO:0006355
Spst11g00195 364 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 214 269 IPR001289 GO:0003700|GO:0006355
Spst11g00195 364 MobiDBLite consensus disorder prediction 107 124 - -
Spst11g00195 364 PRINTS CCAAT-binding transcription factor subunit B signature 215 237 IPR001289 GO:0003700|GO:0006355
Spst11g00195 364 PRINTS CCAAT-binding transcription factor subunit B signature 246 269 IPR001289 GO:0003700|GO:0006355
Spst11g00195 364 ProSiteProfiles NF-YA/HAP2 family profile. 212 272 IPR001289 GO:0003700|GO:0006355
Spst11g00195 364 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 95 331 IPR001289 GO:0003700|GO:0006355
Spst11g00195 364 MobiDBLite consensus disorder prediction 262 302 - -
Spst11g00195 364 Gene3D - 212 273 - -
Spst11g00195 364 MobiDBLite consensus disorder prediction 107 135 - -
Spst11g00195 364 MobiDBLite consensus disorder prediction 1 30 - -
Spst11g00195 364 ProSitePatterns NF-YA/HAP2 subunit signature. 217 237 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00195 Spst-Chr11 7321103 7330214 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Spst11g00195 CBFB_NFYA 1.7e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00195 11 7321103 7330214 Spst11g00195 11 7321103 7330214 ECH