Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst11g00190 | ATGGGAAAGAAGAACAAAGTGAAGGAGAGTGGAGTCAAAGAGCATTGCTCCTCGACACTTTTTGTGTCCAACTTGCCCTATTCCTTCTCCAATCCTCAGTTGGAGGAGACGTTCAGTCAGGTTGGACCTGTGAGGCGCTGCTTCATGGTCACACAGAAAGGGTCAGCTCAGCATCGTGGTTTCGGATATGTACAATTTGCTGTTGAGGAAGATGCCAACCGTGCTATTGATCTAAAGAACGGTACATCTGTTGAAGGTCGTAAAATTGTAGTGAAGCATGCAATGCCTCGTCCTCGCCGTGAGGAACGACAGTCAAAACCAAATAAAGTGGACACAGCAGATGATCACAGAAAGCCAAAAGATGATGATGTAAAAGATAGCAAATTATCTGAAGCAAAGAAACATGTTTCAGTTTTGAAGGAAGAAGAAGTACAAGTCACAATTAAACAGAAAGACTCAAGGAAGCCCATAGAAGTGAAAAAATCAGCTCTTTGTAATGATGTAGTAGATGAGGGTGGTTGCTCAGAAAAGCAGAGGGTTGCCAGAACTGTTATATTGGGTGGTCTCATTAATTCTGATATGGCTGAAGAAGTTCACAGCCAAGCAAGAGAGATTGGCACTGTGTGTTCTGTTAAGTACCCTCTTTCAAGGAAAGATCTCGAGCAACATGGTCTCATGCAAGATGGCTGTCCCATGGATGCTTCGTCTGTAATTTATACAAGTGTAAAATCAGCTCGAGCTTCTGTTGCAATGTTGCATAAAAAAGAGATAAGAGGGGAAACAGTTTGGGCCCGCCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGGAACCTTCCCTTCAAGGCGAAAGATAATGAAATAAGAGATATGTTTTCATCTGCAGGATATGTGTGGGATGTCTTTATTCCACAAAAGTCAGACACAGGCCTGTCTAAGGGCTTTGCATTCGTAAAATTTACCTGCAAGCAAGATGCCGAAAATGCCATTCAAAAGCTGAATGGATCAAAGTTTGCAAAAAGAGTCATAGCTGTTGACTGGGCTGTTCCAAAAAAGATATTTAGTGGTGAAATGCATGATACTCATGCACCAGAGAAAGGACAACAAAACATGAGTGATGAAGATAGTGACGAGGAAGATGTTGAGCTTGTTGATAAAAAATCTGTTCAAGGAGATGATAATGATACAAGCTACTCTAGTGCCATGGAGGAAGAGGGAGCTCCGCCTGAAGATAATTTTGATAAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAACTTGCTTGCATCCTCAAGCAAAGGAACATCTGAAAACAATGATTCTATGTTTTCCAAAGAAAACATAGAGTTAAGATCTGATAAAATTGTTAAGGATGCAGAGGAAAAAGTATCTGATGACTCTGAAAAGGTTTTAAGTATTTCTAAGCCTGAAATTTCCAGCGGAAACAACTTATCAAATCCTAAGGGAACGGAAGAAGAAGATTTGCAGAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAACGAAGAAGTAAAACAACGATTTTCTGCGTTTGGGGAAGTAGAATACTTCGCTCCTGTTCTCCACCAAGTTACCAAGCGACCAAGAGGGACTGGTTTTCTTAAGTTTAAAACTGTAGAAGCAGCTAAGACTGCAATTTCAACTGCTATTGCGGCTTCTGGGACAGGTATTTTACTGAAAGGTAGACTATTGAAAGTTTTAAAGGCTTTGGATAAGAAATCAGCACATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCATGACCACCGGAATCTTTATTTGGCAAAGGAGGGACTTATTCTAGAGGGAACTACAGCTGCTGAAGGGGTTTCAGACAGTGATATGTCAAAACGCCAAGATGCCCTATGTTATGTTGCATTTGGCCTTGCAAATGTTGTGGTTAAAATTCTATCTTGCTCAAGTGTAATTTCTTCGGCTGGTGTTAGTGCTCAACATTATTTATGGAAATTTCATAGGTTGGAGAGGAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTCTCTAGAACTAGACTCGTTATCTACAACTTACCCAAGTCAATGAATGAGAAACAACTCAAGAAGCTTTGCATTGATGCGGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGACAGATAAAGTTTTTGAAAAATGAAAAGAACGGGAAGGTTGCTCAAGAACGCTATTCACGGGGAGTTGCCTTTGTTGAATTTTCAGAGCATCAGCATGCCCTTGTGGCTCTGAGAATTTTGCTTTCATTGACTACAGAAACATTTGGTCCTGAACATCGACCGATTGTGGAGTTTGCTCTTGATAATGTTCAAACACTTAAACTTCGGAAGGCAAAGCTACAATTTCAGCAACAGCAGGCTCCTCAAGAAGACAACAATGCCATGGAAAATGACAAACCTGCCACTGTAGGAGTTCGGAAGCAGGACAGAAAACGGAAGTCAAGAGAGCAGGGTGAACCGGCTAAAGAATCAGTACTGAATACAATGGGTGAATCAGGTGGTCGTGGTCCACTGGCAAATGGAAAATCCCTTCAAGGACACAAATCCAAAAGACAGATAGGCAATAATAAGAGTAAAAGAGGATTGAAAGAAAATCCAGAAGCCTTGTTCATGAAGCCAAAGAATAACCAGAATGGCCAGAACAATGGTGGTGTATCAGTCGAAGATCAAAACACTGCCACTGCCACCAATAGAAGAAAATCAGGAAATAAAGATGATGATACTGGATTTAGGAAAAGAAAGATGCAGAATCAAGAACAAGAAGAAGGCAGTAAGGTTTCCAAGAAACGGCCTAAGAAGAATAAAGATTCAGTAGGGAAGGACGTAGTAGACAAGCTTGACATACTTATAGAACAATATAGATCTAAGTTCTCACAAAAGGGTTCCCAAGAGAATGGTGAAGAGAAAAAACCTTCAAAACAGCTTAGGAAATGGTTTCAATCATAG | 3012 | 0.4057 | MGKKNKVKESGVKEHCSSTLFVSNLPYSFSNPQLEETFSQVGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIDLKNGTSVEGRKIVVKHAMPRPRREERQSKPNKVDTADDHRKPKDDDVKDSKLSEAKKHVSVLKEEEVQVTIKQKDSRKPIEVKKSALCNDVVDEGGCSEKQRVARTVILGGLINSDMAEEVHSQAREIGTVCSVKYPLSRKDLEQHGLMQDGCPMDASSVIYTSVKSARASVAMLHKKEIRGETVWARQLGGEGSKTQKWKLIVRNLPFKAKDNEIRDMFSSAGYVWDVFIPQKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFAKRVIAVDWAVPKKIFSGEMHDTHAPEKGQQNMSDEDSDEEDVELVDKKSVQGDDNDTSYSSAMEEEGAPPEDNFDKEADIARKVLNNLLASSSKGTSENNDSMFSKENIELRSDKIVKDAEEKVSDDSEKVLSISKPEISSGNNLSNPKGTEEEDLQRTVFISNLPFECDNEEVKQRFSAFGEVEYFAPVLHQVTKRPRGTGFLKFKTVEAAKTAISTAIAASGTGILLKGRLLKVLKALDKKSAHDKELEKAKNEVHDHRNLYLAKEGLILEGTTAAEGVSDSDMSKRQDALCYVAFGLANVVVKILSCSSVISSAGVSAQHYLWKFHRLERKKKTKLQSPNFHVSRTRLVIYNLPKSMNEKQLKKLCIDAVISRATKQKPVIRQIKFLKNEKNGKVAQERYSRGVAFVEFSEHQHALVALRILLSLTTETFGPEHRPIVEFALDNVQTLKLRKAKLQFQQQQAPQEDNNAMENDKPATVGVRKQDRKRKSREQGEPAKESVLNTMGESGGRGPLANGKSLQGHKSKRQIGNNKSKRGLKENPEALFMKPKNNQNGQNNGGVSVEDQNTATATNRRKSGNKDDDTGFRKRKMQNQEQEEGSKVSKKRPKKNKDSVGKDVVDKLDILIEQYRSKFSQKGSQENGEEKKPSKQLRKWFQS | 1003 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst11g00190 | 1003 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 268 | 389 | - | - | |
| Spst11g00190 | 1003 | MobiDBLite | consensus disorder prediction | 824 | 842 | - | - | |
| Spst11g00190 | 1003 | SUPERFAMILY | RNA-binding domain, RBD | 502 | 712 | IPR035979 | GO:0003676 | |
| Spst11g00190 | 1003 | CDD | RRM4_RBM28_like | 693 | 791 | - | - | |
| Spst11g00190 | 1003 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 502 | 585 | IPR000504 | GO:0003723 | |
| Spst11g00190 | 1003 | FunFam | RNA-binding motif protein 28 | 692 | 788 | - | - | |
| Spst11g00190 | 1003 | FunFam | - | 2 | 129 | - | - | |
| Spst11g00190 | 1003 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 277 | 355 | IPR000504 | GO:0003723 | |
| Spst11g00190 | 1003 | Gene3D | - | 2 | 127 | IPR012677 | - | |
| Spst11g00190 | 1003 | Gene3D | - | 264 | 387 | IPR012677 | - | |
| Spst11g00190 | 1003 | MobiDBLite | consensus disorder prediction | 361 | 417 | - | - | |
| Spst11g00190 | 1003 | CDD | RRM3_RBM28_like | 502 | 583 | - | - | |
| Spst11g00190 | 1003 | SMART | rrm1_1 | 19 | 92 | IPR000504 | GO:0003723 | |
| Spst11g00190 | 1003 | SMART | rrm1_1 | 694 | 786 | IPR000504 | GO:0003723 | |
| Spst11g00190 | 1003 | SMART | rrm1_1 | 503 | 581 | IPR000504 | GO:0003723 | |
| Spst11g00190 | 1003 | SMART | rrm1_1 | 278 | 351 | IPR000504 | GO:0003723 | |
| Spst11g00190 | 1003 | CDD | RRM1_RBM28_like | 19 | 97 | - | - | |
| Spst11g00190 | 1003 | MobiDBLite | consensus disorder prediction | 893 | 920 | - | - | |
| Spst11g00190 | 1003 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 96 | IPR000504 | GO:0003723 | |
| Spst11g00190 | 1003 | MobiDBLite | consensus disorder prediction | 983 | 997 | - | - | |
| Spst11g00190 | 1003 | CDD | RRM2_RBM28_like | 278 | 354 | - | - | |
| Spst11g00190 | 1003 | Gene3D | - | 490 | 593 | IPR012677 | - | |
| Spst11g00190 | 1003 | SUPERFAMILY | RNA-binding domain, RBD | 684 | 769 | IPR035979 | GO:0003676 | |
| Spst11g00190 | 1003 | MobiDBLite | consensus disorder prediction | 803 | 818 | - | - | |
| Spst11g00190 | 1003 | MobiDBLite | consensus disorder prediction | 361 | 376 | - | - | |
| Spst11g00190 | 1003 | Coils | Coil | 580 | 607 | - | - | |
| Spst11g00190 | 1003 | SUPERFAMILY | RNA-binding domain, RBD | 18 | 263 | IPR035979 | GO:0003676 | |
| Spst11g00190 | 1003 | MobiDBLite | consensus disorder prediction | 93 | 131 | - | - | |
| Spst11g00190 | 1003 | Gene3D | - | 692 | 788 | IPR012677 | - | |
| Spst11g00190 | 1003 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 693 | 807 | IPR000504 | GO:0003723 | |
| Spst11g00190 | 1003 | MobiDBLite | consensus disorder prediction | 464 | 497 | - | - | |
| Spst11g00190 | 1003 | SUPERFAMILY | RNA-binding domain, RBD | 273 | 358 | IPR035979 | GO:0003676 | |
| Spst11g00190 | 1003 | MobiDBLite | consensus disorder prediction | 478 | 494 | - | - | |
| Spst11g00190 | 1003 | MobiDBLite | consensus disorder prediction | 921 | 973 | - | - | |
| Spst11g00190 | 1003 | PANTHER | RNA-BINDING MOTIF PROTEIN 14B | 15 | 635 | - | - | |
| Spst11g00190 | 1003 | MobiDBLite | consensus disorder prediction | 803 | 1003 | - | - | |
| Spst11g00190 | 1003 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 279 | 348 | IPR000504 | GO:0003723 | |
| Spst11g00190 | 1003 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 89 | IPR000504 | GO:0003723 | |
| Spst11g00190 | 1003 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 504 | 561 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst11g00190 | Spst-Chr11 | 7263431 | 7273961 | Transposed |