Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00189 ATGGAGTCATATGTTGATGTCTTATCACCTAAATGCTCTCGATCAACTGGATTTTCCCCTGGTCCTGGCAAAAGACAGAAGTTATCAAATGTTGTTGACCACACGAATCCATTTGCAATATCTGATGTTGTGGTTCGTATAGAGAATAAAAAATTTGGAAGTGTCACAAAAGACATAGAGGCCCTTGTAGCCCGAAAAATGCAGATACTTGGACCTTACTTCGCAAAGTACCCCGGACTTGTCAATCAATTGATGAATGTGGTAAATGACCACGATGAAGACACTCTTATGTTAGAAGATGATCGAGGCACTTGTTTGACACATTCTAATGTCGTAGATTTTGAGGGGGAAAACACCGAGAAGTATTTTCAGGCAGCACCAATTCCTGCCGTGATTCGCATTGATTCAGATGAAGAATATGATGGAGATAAAAATTCTATTGTTCCATTTCATGAAGCTTCAGAAGAGGTAGATGATAGACATGATAAATCTATTGTTCCGTTCCATGAAATTATGTTGCCGAGGCTGGTTGCACCGTCTTCTGTTGTGATGAATACAATTGGGTTCACTCCCTTTCCTTATCATGGCGAAAGTAAAGATCTGAAAATTGAGACAAGTATGGGGGGTAAAGGTAGAACTACGGGAGATAAAGGTGTTTATATTGGTGTAAAGGAGGAAGGGGATTATCAAGTTGATACCGTGGACAATGATAGCCTGGAAGATATTTGGAAGGAGATGTCAATGGCAATGGAGTGTTCCAAAGTTGTTTCCGCTAATCCTCTGCCAGATGAAGAAGTTGAAACAGACGATGAAGAATCGGAAAGAGATGAGGACTGTGATCATTTTTTTATTTTAAAAGATGATATTGGTTATGTTTGTCGAGTTTGCGGCATTATTGACCGAAAAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGGAGCACAAGGACTTATGCGTCTGACTCTTGTAATACCAAAGCAGATGTACTTGGAGTTAATGTTGCTGAAGATGATCTTAAGATAACAGAATTCTCAGCACATCCTAGACATATGAAACGGATGAAACCCCATCAAATTGAAGGATTCAATTTTCTAGTTAGGAATCTTGCGGGTGATCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCAGGAAAAACGTTCATGATTATTAGTTTCATGCAAAGTTTTCTAGGCATATATCCGAATGCGAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACCTGGAAAAAGGAGTTCCAAACATGGCAAGTGGAGGACATACCTCTATATGACTTTTACACAGTGAAGGCAGATAGTAGAAGTCAACAACTAGAAGTGTTGAAGCAATGGGTGGATAAGAAGAGTATTCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTCTGTAATGATGGGACCAACAATACTTCTTTATCTTGCCAAGAGATTTTACTCAAGATTCCTTCAATTCTTATTTTAGACGAGGGGCATAATCCAAGAAATGAAAACACAGATATGGTTCAATCCATTGTTAAAGTTCACACACCTAGAAAAGTTGTTCTCTCAGGAACACTTTATCAAAATCATGTCAAGGAGGTGTTTAACATTCTAAATCTTGTTCGTCCAAAATTTTTGAAGATGGAAACATCTAAGCCTATCGTCAGGCGCATTCATAGTAGAGTTCATATACAAGGTGTTAGAAGCTTCTATGATCTTGTTGAAAACATTTTGAAGGGCACAGATTTTAAAAGTAAAGTTGCCGTCATACGTGATTTGCGCGAGATGACAAGCAATGTCCTTCATTATTATAAAGGGGATTTTCTTGATGAGCTTCCTGGTCTCGTTGATTTTACTGTGGTACTCAATCTTAGCCCTAAACAAAAGCTTGACATTGAAAAATTAAAGAAGTCATCTGGAAAGTTCAAGATATCTTCTATAGGCAGTGCTGTCTATTTGCACCCTAAACTGAAAACTTTAGCTGAAAAATGTGGAGAAAATAATATATCTGATGACATAATTGATGCTTTGATAGAAAAATCAGATGCTAGAGATGGTGTGAAGTCCAAATTCTTTTTGAACATGCTCAATTTGTGTGAATCAGCTGGCGAGAAACTTCTAGTATTTAGTCAGTACTTGCTCCCTTTGAAATATTTGGAAAGGTTAACCATGCAATGTAAAGGCTGGAGTCTAGGAAAGGAAATATTTGTAATCTCAGGAGAATCAAGCTATGAGCACCGAGAATGGTCCATGGAAAGATTTAACAATTCTCCTGATGCCAAAGTCTTTTTTGGCTCTATAAAGGCTTGTGGAGAGGGTATATCATTGGTCGGGGCATCACGCATAGTTATTTTGGATGTTCACCTTAATCCTTCTGTTACTCGCCAAGCTATTGGTCGTGCGTTCAGACCGGGCCAGCAGAAGAAAGTCTTTGTGTATCGATTGGTGTCTGCTGATTCTCCAGAAGAGGAGGATCACAACACTTGTTTCAAGAAGGAATTCATTTCAAAAATGTGGTTTGAATGGAACGAGTATTGTGGTGATCGAGCATTTGAAGTTGAGGAAGTTGATGTGAAAGATTGTAGCGATATGTTTCTTGAAAGTCCATTGCTGGGGGAAGATGTAAAAGCTCTGTACAAAAGGTAG 2661 0.3878 MESYVDVLSPKCSRSTGFSPGPGKRQKLSNVVDHTNPFAISDVVVRIENKKFGSVTKDIEALVARKMQILGPYFAKYPGLVNQLMNVVNDHDEDTLMLEDDRGTCLTHSNVVDFEGENTEKYFQAAPIPAVIRIDSDEEYDGDKNSIVPFHEASEEVDDRHDKSIVPFHEIMLPRLVAPSSVVMNTIGFTPFPYHGESKDLKIETSMGGKGRTTGDKGVYIGVKEEGDYQVDTVDNDSLEDIWKEMSMAMECSKVVSANPLPDEEVETDDEESERDEDCDHFFILKDDIGYVCRVCGIIDRKIETIFEFQYKVKRSTRTYASDSCNTKADVLGVNVAEDDLKITEFSAHPRHMKRMKPHQIEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGIYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVDKKSILFLGYKQFSSIVCNDGTNNTSLSCQEILLKIPSILILDEGHNPRNENTDMVQSIVKVHTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSKPIVRRIHSRVHIQGVRSFYDLVENILKGTDFKSKVAVIRDLREMTSNVLHYYKGDFLDELPGLVDFTVVLNLSPKQKLDIEKLKKSSGKFKISSIGSAVYLHPKLKTLAEKCGENNISDDIIDALIEKSDARDGVKSKFFLNMLNLCESAGEKLLVFSQYLLPLKYLERLTMQCKGWSLGKEIFVISGESSYEHREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIVILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVSADSPEEEDHNTCFKKEFISKMWFEWNEYCGDRAFEVEEVDVKDCSDMFLESPLLGEDVKALYKR 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00189 886 CDD SF2_C_SNF 693 821 - -
Spst11g00189 886 MobiDBLite consensus disorder prediction 1 27 - -
Spst11g00189 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 848 IPR027417 -
Spst11g00189 886 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 370 549 IPR014001 -
Spst11g00189 886 Pfam SNF2-related domain 376 582 IPR000330 GO:0005524|GO:0140658
Spst11g00189 886 SMART ultradead3 352 562 IPR014001 -
Spst11g00189 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 563 IPR027417 -
Spst11g00189 886 Gene3D - 324 574 IPR038718 -
Spst11g00189 886 MobiDBLite consensus disorder prediction 9 27 - -
Spst11g00189 886 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 229 885 IPR044567 GO:0080188
Spst11g00189 886 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 696 864 IPR001650 -
Spst11g00189 886 Pfam Helicase conserved C-terminal domain 699 809 IPR001650 -
Spst11g00189 886 SMART helicmild6 725 810 IPR001650 -
Spst11g00189 886 Gene3D - 618 875 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00189 Spst-Chr11 7256288 7261801 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst11g00189 SNF2_N 1.7e-19 CL0023