Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00187 ATGGAGTCCTCGGTTGATGTTGAATCAACTGCAAAACGACCCCGACCAAGTGGCATTTCTCCTGCCCTCGATGGAGACAAAAGACTTGAAATTTCAAGTGGCAGCCTTCCAGACCCAACACATGATAAGACTTCATATGTTGTTGATTACAACAATCCATTCGCAATATCTGATGTTCTGGATAGTTTAGAGCGTGGAAGATTTGGAAGTGTCACAAAGGACATAGAGGACCTTATAGCCCAAAAAATGCAAATATTGGGCCCTTACTTTGTTAAATATCCCATACTAGTGGATCAATGGGTGAAAGTTGTCATGAAACACAAGGAAGGAATGGTAAATCAACAAGTTACTGTTTTGACCCACGAAAATGTCATAGATCTGAAGGGGGAACACACTGGAAAGGATGTCCCTGAATCACAAGATCACGTTGTGATTATTGATTCAGATGAAGAAGACAATACAGATAAAAAATCTATTATCCCATTTCATGAAGTTGTGTTGCCGAGACTAATTGCACCATCTCCTGCATTGAAGATGATTGGGTATCAACCTCCCATTAACCTGGGAGAAAGAGATCTAAAAATTGAGACAAGTATGGCTGGTAAACATAACAACACTTGGAACGATAAAGGTGTTTATATTGGTGTACAGGAACGGGAAGAAGATGAGGTTGATACTGAAGATGATGGTCTAGAAGATATTTGGAAGGAAATGTCAATGGCAATAGAATGTTCAAAAGATGTTTCAGTGAATCCTCAGCTGGATGAAGAAGAAGAAGAAGATGATGACGATTGTGATCATTCTTTTGTCTTAAAAGACGATCTTGGTTATGTTTGTCGTGTTTGTGGGGTTATTGAACGGGGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGCAGCACAAGAACTTATGCATCTGATTCATGGAATAACAAAGGAAAAGAAGATGTATTTGGAATTAATGTTGTTGAAGACGACCTGAGAGTTACTGAAATCCCAGCGCATCCTAGACACATGAAACAGATGAAACCCCATCAAATTGAAGGATTTAATTTTCTTGTTAGAAATCTTGCAGGTGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGAAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTTTAGGCAAGTATCCGAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAACATGGCAGGTTGAGGACATACCTCTATATGACTTCTACACAGTGAAGGCAGACAGTAGAAGTCAACAACTAGAAGTGCTGAAGCAATGGATGGAGCAGAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCTTCTATCGTATGTGATAATGGGACCAACTCTACATCATTATCTTGCCAAGATATTTTGCTTAAGGTTCCTTCAATTCTTATATTAGATGAGGGGCATAATCCTAGAAATGAAAACACAGATATGGTACAGTCCCTTGCTAAAGTTCAAACGCCTAGAAAAGTTGTGCTGTCAGGGACGCTTTATCAAAATCATGTCAGGGAGGTGTTTAACATTTTAAATCTTGTGCGGCCAAAATTTTTGAAGATGGAAACATCGAAGCCTATTGTGAGGCGCATTCATAGTAGAATTCATATACCAGGGGTGAGAAGCTTCTATGACTTAGTTGAAAACACTTTGCAGAAGGACACTGATTTCAAAAGGAAAATAGCTGTCATACAAGATTTACGTGAGATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTTGATTTTACTGTGGTGCTCACTCTTAGCCCTAGACAGAAGCCTGAAGTAGGGAAAATAAAAAAGTTCTCCAGAAGAAAGTTCAAGATATCTTCAGTAGGAAGTGCTGTCTATTTGCATCCTAAACTGAAACCACTAGCAGAAAATTGTGGTGAAAATTCTATTTCTGATCATGTAATGGATGATTTGATAGAGAAACTGGATGTTAGAGATGGTGTGAAGTCAAAATTCTATTACAACATGCTAAATTTGTGTGAATCAGCAGGGGAGAAGCTGCTAGTTTTCAGTCAGTATCTGTTACCTTTGAAATATTTAGAAAGGTTGACTATGAAGTGGAAAGGCTGGAGTCTTGGAAGAGAAATTTTTGTAATTTCAGGAGAATCAAGTTCAGAGCATCGAGAATGGTCCATGGAAAAATTTAATAATTCTCCTGTAGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGTATATCACTGGTTGGGGCCTCCCGCATAATTATTTTGGACGTTCATCTCAACCCGTCAGTTACACGTCAAGCTATAGGTCGTGCATTCAGACCTGGCCAGATGAAGAAGGTGTTTGTGTATCGTTTAGTATCTGCTGATTCTCCAGAAGAGGAAGACCACTATGCTTGTTTCAAGAAAGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTGATCGAGCTTTTGAAGTTGAAGCGGTTGAGGTGAAAGAGTGTGGTGATCAATTTCTTGAAAGTCCACTGTTAGGGGAGGATGTAAAAGCTTTGTATAAAAGGTTAGTCTGTGTTCCAGGTGATCAAGAGAATCAGAGTCTGGTTATCCATATAACAGATCAAGAGAATTTGACTTTGCAAGCTTGGAATCCTCCATCCTTTATTTTCATGTCCTATAACAAATTTCATGTGCATCAAGTTTGA 2769 0.3893 MESSVDVESTAKRPRPSGISPALDGDKRLEISSGSLPDPTHDKTSYVVDYNNPFAISDVLDSLERGRFGSVTKDIEDLIAQKMQILGPYFVKYPILVDQWVKVVMKHKEGMVNQQVTVLTHENVIDLKGEHTGKDVPESQDHVVIIDSDEEDNTDKKSIIPFHEVVLPRLIAPSPALKMIGYQPPINLGERDLKIETSMAGKHNNTWNDKGVYIGVQEREEDEVDTEDDGLEDIWKEMSMAIECSKDVSVNPQLDEEEEEDDDDCDHSFVLKDDLGYVCRVCGVIERGIETIFEFQYKVKRSTRTYASDSWNNKGKEDVFGINVVEDDLRVTEIPAHPRHMKQMKPHQIEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWMEQKSILFLGYKQFSSIVCDNGTNSTSLSCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSKPIVRRIHSRIHIPGVRSFYDLVENTLQKDTDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLTLSPRQKPEVGKIKKFSRRKFKISSVGSAVYLHPKLKPLAENCGENSISDHVMDDLIEKLDVRDGVKSKFYYNMLNLCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLGREIFVISGESSSEHREWSMEKFNNSPVAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQMKKVFVYRLVSADSPEEEDHYACFKKELISKMWFEWNEYCGDRAFEVEAVEVKECGDQFLESPLLGEDVKALYKRLVCVPGDQENQSLVIHITDQENLTLQAWNPPSFIFMSYNKFHVHQV 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00187 922 SMART ultradead3 340 550 IPR014001 -
Spst11g00187 922 SMART helicmild6 715 800 IPR001650 -
Spst11g00187 922 Pfam SNF2-related domain 364 565 IPR000330 GO:0005524|GO:0140658
Spst11g00187 922 Pfam Helicase conserved C-terminal domain 691 799 IPR001650 -
Spst11g00187 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 558 IPR027417 -
Spst11g00187 922 Gene3D - 315 557 IPR038718 -
Spst11g00187 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 838 IPR027417 -
Spst11g00187 922 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 689 852 IPR001650 -
Spst11g00187 922 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 215 883 IPR044567 GO:0080188
Spst11g00187 922 MobiDBLite consensus disorder prediction 1 43 - -
Spst11g00187 922 CDD SF2_C_SNF 689 811 - -
Spst11g00187 922 Gene3D - 607 858 IPR027417 -
Spst11g00187 922 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 358 537 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00187 Spst-Chr11 7237736 7245694 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst11g00187 SNF2_N 6.2e-20 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00187 11 7237736 7245694 Spst11g00187 11 7237736 7245694 ECH