Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00115 ATGGAGTCTCTAGTTCTTCAACTCCATGAAATCTCAGCTGTCAAATTTGGCAATTTCAAGCTCAAATCTGGGATCTCCTCACCAATCTACATAGACCTCCGCCTTGTTATCTCTTACCCTTCTGTCCTCCGGAATGTTTCTCAAACTCTTATTTCCTCTGTCTCTTCCACTTCATTTGACCTTGTCTGCGGTGTCCCGTACACTGCTCTTCCCATTGCCACTTGTGTGTCCATTACCCGGAACATCCCCATGGTCATGCGCCGCAAGGAAATCAAAGATTATGGTACTTCTAAAGCCATTGAAGGTGATTTCAGGCATGGACAAAGTTGCTTGATAATTGAGGATCTAGTTACAAGTGGCACATCAGTTTTGGAAACTGCTGCGCCACTGCGTGCTGCAGGGTTGAAGGTCAGTGATGCTGTTGTTTTGATTGATAGAGAGCAAGGCGGGAGAGAGAATCTGGAGAGTAATGGAATCAAGCTGCATGCAATTCTTAAATTGACTGAAATGGTGGAAATTTTGAGGGAAAAAGGAAAGCTCAATGAGAAAATGCAAGAGGTTGTTTTGAGATTCTTAGAAGAGAATCAGAAGATTGCTGCTTTGGCTACAAGAACAAAGTTCAAGGCCTTTCCGTTTTTGAAAAGGGCTAAATTGTCCATGAATCCAACAGGAAAGAGGTTGTTTGAGATAATGGCTGAGAAGGAGAGTAATCTGTGTTTGGCTGCAGATGTTGCAACTGCTGCTGAATTACTTGAAATTGCTGACAAGGTTGGGCCTGAGATATGCTTGCTGAAGACACATGTCGATATTTTTCCAGATTTTACACCTGATTTTGGTTCTAAGCTTCGTTTGATTGCAGAAAAACATAACTTCTTAATCTTTGAGGATCGTAAGTTTGCTGACATTGGTAACACAGTGACCATGCAGTATGAAGGAGGGATCTTCCATATATTGGATTGGGCTGACATAGTGAATGCTCACATTATATCTGGTCCTGGAATTGTGGAAGGACTGAAGTTGAAGGGTTTGCCTCGTGGAAGGGGTCTACTGCTCCTTGCTGAAATGAGTTCAAGTGGTAACCTTGCCAAGGGCGATTACACCACTGCTGCGGTGAAAATCGCTGAGGATCATTCTGACTTTGTTATTGGCTTCATCTCAGTCAATCCAGCATCATGGCCTCGGGCACCTGTAAATCCCTCTTTCATTCATGCAACTCCTGGAGTTCAAATGGTGACTGGTGGTGATGCTTTAGGGCAGCAATATAACACACCATATTCTGTTGTCCATGATAGGGGTAGTGACATCATCATAGTGGGTCGTGGCATCATCAAGGCCAAAATTCCGGGTCAGGCAGCTCGTGAATATCGTCTTCAAGGATGGTATGCATATTTGGCCAAGTGCAGCGAAAGCCTGTAG 1416 0.44 MESLVLQLHEISAVKFGNFKLKSGISSPIYIDLRLVISYPSVLRNVSQTLISSVSSTSFDLVCGVPYTALPIATCVSITRNIPMVMRRKEIKDYGTSKAIEGDFRHGQSCLIIEDLVTSGTSVLETAAPLRAAGLKVSDAVVLIDREQGGRENLESNGIKLHAILKLTEMVEILREKGKLNEKMQEVVLRFLEENQKIAALATRTKFKAFPFLKRAKLSMNPTGKRLFEIMAEKESNLCLAADVATAAELLEIADKVGPEICLLKTHVDIFPDFTPDFGSKLRLIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILDWADIVNAHIISGPGIVEGLKLKGLPRGRGLLLLAEMSSSGNLAKGDYTTAAVKIAEDHSDFVIGFISVNPASWPRAPVNPSFIHATPGVQMVTGGDALGQQYNTPYSVVHDRGSDIIIVGRGIIKAKIPGQAAREYRLQGWYAYLAKCSESL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00115 471 Gene3D - 1 206 IPR029057 -
Spst11g00115 471 NCBIfam orotidine-5'-phosphate decarboxylase 238 456 IPR014732 GO:0004590|GO:0044205
Spst11g00115 471 SUPERFAMILY Ribulose-phoshate binding barrel 211 464 IPR011060 -
Spst11g00115 471 Gene3D Aldolase class I 207 468 IPR013785 -
Spst11g00115 471 CDD PRTases_typeI 59 166 IPR000836 -
Spst11g00115 471 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 293 306 IPR018089 GO:0004590|GO:0006207
Spst11g00115 471 SMART OMPdecase_2 237 455 IPR001754 GO:0004590|GO:0006207
Spst11g00115 471 CDD OMP_decarboxylase_like 238 455 - -
Spst11g00115 471 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 215 IPR023031 GO:0004588|GO:0006221
Spst11g00115 471 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 1 467 - -
Spst11g00115 471 NCBIfam orotate phosphoribosyltransferase 8 169 IPR004467 GO:0004588
Spst11g00115 471 Pfam Phosphoribosyl transferase domain 55 152 IPR000836 -
Spst11g00115 471 FunFam Uridine monophosphate synthetase 207 468 - -
Spst11g00115 471 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 236 455 IPR001754 GO:0004590|GO:0006207
Spst11g00115 471 FunFam Uridine monophosphate synthetase 1 201 - -
Spst11g00115 471 SUPERFAMILY PRTase-like 3 189 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00115 Spst-Chr11 2480233 2483671 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g02126 5 56642361 56645018 Spst11g00115 11 2480233 2483671 PCT