Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00104 ATGGAAGATAATCCTCCCTCAAGTGTTTTAGATGGGATGGTTGTTGGAATCAAATTTGGCATGGCTACACGCCAGGAAATTTGTACTGCATCCATTAGCGACTCTTCAATTAGTCATGCTAGTCAGCTCTCAAATCCCTTCCTTGGGCTACCCCTTGAATTTGGCAGATGTGAATCTTGTGGTACATCTGAAGCAGGAAAATGTGAAGGTCACTTTGGATATATTGAGCTACCAGTACCAATATATCATCCTAGTCATATTAGTGAGTTGAAACGGATGCTGAGCCTTGTCTGTTTAAATTGTTTAAAATTGCGGAAAGCCAAGGAGGGTAATGCTGCTCAAGTTTCTATACGGGAGGTTAAATCGAGTGAAGGGGCTAGTTATTTGGCACTCAAGGTACCTAAATCGAAGAAGCTTGATGGTGGTTTTTGGAGATTTTTAGAAAAATATGGCTATCGCTATGAGGGTGATCACACTCGAGCCTTACTTCCTTGTGAGGCAATGGAAATTATTAAGAGAATTCCAGTAGAAACCAGAAAAAAACTTGCTGGAAAAGGGTATTTTCCACAAGATGGATATGTTTTGAAGTATCTTCCAGTGCCACCTAATTGCTTGTCCGTGCCAGAAGTTTCGGACGGCATCAGTGTCATGTCTTCGGATCCTTCTATGACAATTCTCAGAAAATTGCTCAGGAAGGTTGAAATCATCAAAAGTTCTAGATCTGGAGAACCAAATTTTGAGTCTCATCATGTCGAAGCAAATGATTTGCAGTCAGTGGTTGACCAGTATTTTCAAATTAGGGGAACTTCTAAGGCAGCACGTGATATAGAAACACATTTTGGGGTAAATAAAGAGCTTAATGCATCATCAACAAAAGCATGGCTAGACAAAATGCGGACTTTATTTATAAGAAAGGGATCAGGGTTTTCCTCCCGGAATGTGATAACTGGAGATTGTTATAAAAGGATAAATGAAGTAGGAATTCCTGTTGAAGTTGCCCAACGAGTAACTTTTGAGGAGAGAGTTAACATCCATAACATAAGTTATTTACAGAAATTAGTTGATGAAAATTTGTGCCTGACCTACAAGGAAGGTGCCTCAACTTTTTCACTCAGGGAGGGTTCAAAGGGTCACATATATCTGAAGCCTGGTCAGATAGTGCATCGGAGGATTATGGATGGGGATATTGTCTTCATTAACAGGCCACCTACAACACACAAACACTCTTTACAGGCACTTTTTGTGTACATCCATGATGACCACACCGTGAAAATAAATCCTTTAATTTGTGGACCACTTGGGGCTGATTTTGATGGTGACTGTGTCCATCTGTTTTATCCGCAATCACTTGGTGCCAAAGCAGAAGTTGTGGAGCTATTTTCTGTGGAGAATCAGCTGCTCAGCTCTCACAGTGGTAATTTGAATCTACAATTAACAACAGATTCGTTGTTGTCACTGAAGATGTTGGTCAAGAGATGTTTTTTTGATAGAGAGGCAGCTAATCAATTGGCAATGTTTCTTTTACCTTTGCCTCGACCTAGTTTGATCAAGGCCAGTTCTGGTGATTCTTATTGGACTTCCATCCAAATGTTACAGTGTGCTCTACCTCTAGGTTTTGATTGCTCTGGGGGACGGTATTTGATTAGGCAGAGTGAAATCTTAGAATTTGATTTCAACCGGGATGTCTTGCCTGCAACAATAAATGAAATAGCAGCCTCAATTTTCTTTAGCAAGGGTCCAAAGGAGGCACTAAAGTTCTTTGATGTATTGCAGCCATTTTTGATGGAAAGCTTATTCGCCGATGGATTTAGTGTTAGCCTGCAAGATTATTCAATATCCAGGGCGATCAAAAGAATTATAAACAGAAACATTGGTAAAGTTTCTTCTGTCTTGTATCAGCTTAGGTCCATATACAATGAGCTCGTGGCGCAGCAATTGGAGAAGCTTATTCGCGATATTGAACTTCCTATTATTAATTTTGCTCTAAAGTCAACTAAACTAGGAGATTTAATTGATTCAAAGAGTAAATCAGCAATTGATAAGGTTGTTCAGCAGATTGGGTTCTTAGGGCAGCAACTTTTTGACAGGGGAAGATTCTATTCAAAAGGATTGGTAGAAGATGTAGCATCTCATTTTCATGTGAAGTGTTGTTATGAGGGAGATGGTTATCCCTCTGCTGAGTATGGATTGCTCAAAGGGTCCTTTTTTAATGGTTTGGATCCATATGAAGAGATGGTGCATTCGATTTCAACAAGGGAAATAATGGTTCGTTCTTCGAGGGGATTATCTGAACCAGGAACACTCTTTAAGAACTTGATGGCCATCCTGCGGGATGTTGTTATCTGTTATGATGGAACTGTCAGAAATATTTGCAGTAATTCTATTATCCAGTTTGAATATGGATTAGAAAAAACTGAGCACCTATTTCCTGCTGGTGAGCCTGTAGGTGTATTAGCTGCAACTGCTATGTCAAATCCTGCTTACAAGGCCGTCCTTGATGCTAGTCCTAATAGCAATTCCTCATGGGAGTTGATGAAGGAAATATTACTCTGCAAGGTCAATTTTAGGAATGAACCTGTTGATAGGCGTGTTATTTTGTACTTGAATGACTGTGACTGTGGAGGGAGTTATTGTCGGGAAAATGCGGCATATAAAGTTAAAGATCAATTGAAAAAAGTCAGTCTTAAGGATGTAGCAGTGGAGTTCGTTATTGAATACCAAGAACAGCGAGTTCAAAAGGGAAATTCTGAAACTGATGCCGGTCTTGTTGGTCATATTTATCTTGATGAGGTTATTCCATTTCCTTTCCAATCAATTTGA 2820 0.3968 MEDNPPSSVLDGMVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHISELKRMLSLVCLNCLKLRKAKEGNAAQVSIREVKSSEGASYLALKVPKSKKLDGGFWRFLEKYGYRYEGDHTRALLPCEAMEIIKRIPVETRKKLAGKGYFPQDGYVLKYLPVPPNCLSVPEVSDGISVMSSDPSMTILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKAARDIETHFGVNKELNASSTKAWLDKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRVTFEERVNIHNISYLQKLVDENLCLTYKEGASTFSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALFVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLGAKAEVVELFSVENQLLSSHSGNLNLQLTTDSLLSLKMLVKRCFFDREAANQLAMFLLPLPRPSLIKASSGDSYWTSIQMLQCALPLGFDCSGGRYLIRQSEILEFDFNRDVLPATINEIAASIFFSKGPKEALKFFDVLQPFLMESLFADGFSVSLQDYSISRAIKRIINRNIGKVSSVLYQLRSIYNELVAQQLEKLIRDIELPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSKGLVEDVASHFHVKCCYEGDGYPSAEYGLLKGSFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGLEKTEHLFPAGEPVGVLAATAMSNPAYKAVLDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGSYCRENAAYKVKDQLKKVSLKDVAVEFVIEYQEQRVQKGNSETDAGLVGHIYLDEVIPFPFQSI 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00104 939 Pfam RNA polymerase Rpb1, domain 1 42 265 IPR007080 GO:0003677|GO:0003899|GO:0006351
Spst11g00104 939 PANTHER DNA-DIRECTED RNA POLYMERASE 18 931 IPR045867 GO:0003899|GO:0006351
Spst11g00104 939 Pfam RNA polymerase Rpb1, domain 2 308 461 IPR000722 GO:0003677|GO:0003899|GO:0006351
Spst11g00104 939 Gene3D RNA polymerase II, clamp domain 12 122 IPR044893 -
Spst11g00104 939 Pfam RNA polymerase Rpb1, domain 5 738 827 IPR007081 GO:0003677|GO:0003899|GO:0006351
Spst11g00104 939 Gene3D RNA polymerase ii 337 389 - -
Spst11g00104 939 Gene3D - 778 807 - -
Spst11g00104 939 Gene3D RNA polymerase Rpb1, domain 3 470 604 IPR042102 -
Spst11g00104 939 Gene3D - 305 469 - -
Spst11g00104 939 SMART rpolaneu7 191 490 IPR006592 GO:0003677|GO:0003899|GO:0006351
Spst11g00104 939 Pfam RNA polymerase Rpb1, domain 3 465 609 IPR007066 GO:0003677|GO:0003899|GO:0006351
Spst11g00104 939 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 16 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00104 Spst-Chr11 2299481 2319766 Dispersed