Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00079 ATGCCGAGCTTCAATTCTGAGTTACCCATTTCCAATTCAAGTTATGCAGAGGGGAGCACAATTGATTCTTTTCGTGTTTCTGACTTTGGAGCATTTGATCAGTCATATCGCGTAGAGGATGCTGTTGACCTTAGTGGAAACCCAATTTACAACTCACTAAAAGTAAGTAGCCAAACAATTTCTCCGGATTCTGATCACATTAGTAGCCTTGGTCAGTTGCCAACTTCACTTGATAAAAGCCCATTGACGAATCAAACAGAGCCGCATAGGTTGCAATTACAGAAGGTTCAATCATCAAATCCTGGCACCATATTAGTTGGTAATACAGATAACCAGGAGGAGTCTCCCATGGCTGAAGGCAGTCCTAGGACTGATATTTCTACAGATGTTGATACTGATGACAAGAATCAGCCGTTTGATAGAAATCGATCCCTTGCTATTGTTTCTGACTCTAGTGACAGGTCGAAAGATAAATCAGATCAGAAGACTCTGCGCAGGCTTGCTCAAAACCGTGAAGCTGCAAGAAAAAGCCGTTTGAGAAAGAAAGCCTATGTGCAGCAGTTAGAAAGTAGTCGTTTGAAGCTGACCCAACTAGAGCAAGAGCTGCAGCGAGCTAGGCAGCAGGGAATCTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGGGGCAATGCAATTTGATGCAGAGTATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATAAATGAGCTAAGAGCGGCTGTAAATTCTCATGCAAGTGACACTGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGATTTTTAGGCTGAAAGGTGTTGCAGCTAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACGCCTGCTGAGAGGTGTTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTGCTGGCAAATCAATTGGAACCTCTCACAGAGCAGCAACTGATGGGTATCACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCATTGTCTCAAGGCATGGAAGCATTGCAACAGTCCCTTGCCGAGACCTTGTCCACCGGAGCACCTGCCTCGTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCCATGGCCATGGGTAAGCTAGGGACGCTTGAAGGTTTCATTCGACAGGCTGATAATCTTCGTCAGCAGACTCTACAACAAATGCACCGCATACTGACAACTCGCCAATCAGCTCGAGCCCTCCTTGCTATTCATGACTATTTTTCGCGACTGCGTGCTCTCAGTTCACTCTGGCTGGCTCGCCCAAGAGATTGA 1344 0.4546 MPSFNSELPISNSSYAEGSTIDSFRVSDFGAFDQSYRVEDAVDLSGNPIYNSLKVSSQTISPDSDHISSLGQLPTSLDKSPLTNQTEPHRLQLQKVQSSNPGTILVGNTDNQEESPMAEGSPRTDISTDVDTDDKNQPFDRNRSLAIVSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHTLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPASSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00079 447 Coils Coil 181 208 - -
Spst11g00079 447 MobiDBLite consensus disorder prediction 150 164 - -
Spst11g00079 447 MobiDBLite consensus disorder prediction 126 140 - -
Spst11g00079 447 MobiDBLite consensus disorder prediction 60 164 - -
Spst11g00079 447 Coils Coil 238 258 - -
Spst11g00079 447 Pfam Seed dormancy control 244 319 IPR025422 GO:0006351|GO:0043565
Spst11g00079 447 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 160 204 IPR004827 GO:0003700|GO:0006355
Spst11g00079 447 CDD bZIP_HBP1b-like 162 214 - -
Spst11g00079 447 MobiDBLite consensus disorder prediction 60 122 - -
Spst11g00079 447 Gene3D - 161 213 - -
Spst11g00079 447 PANTHER TRANSCRIPTION FACTOR TGA9 99 446 - -
Spst11g00079 447 SMART brlzneu 158 221 IPR004827 GO:0003700|GO:0006355
Spst11g00079 447 SUPERFAMILY Leucine zipper domain 162 205 IPR046347 GO:0003700|GO:0006355
Spst11g00079 447 FunFam BZIP family transcription factor 161 210 - -
Spst11g00079 447 Pfam Basic region leucine zipper 158 204 IPR004827 GO:0003700|GO:0006355
Spst11g00079 447 ProSiteProfiles DOG1 domain profile. 227 444 IPR025422 GO:0006351|GO:0043565
Spst11g00079 447 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 165 180 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00079 Spst-Chr11 1365942 1379378 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst11g00079 DOG1 6.8e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00079 11 1365942 1379378 Spst11g00079 11 1365942 1379378 ECH