Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00055 ATGGTTGCTGAAGGAACCAAAAGGCCTCAACTTTCATTACCAAGGAAAATAAACGTTCAGAAATATGCTGAATCCCGTGCCCTTGAGTTGCAGAGTCTTCAATCTATTATAGAAAATAGAGTAAGCAATGATTATAGGTCTCAAAGGAACAAGAGGAGAAGGACAACTGCGTTTGATAACCAAATTGCAAGAAAAGGGTGCAGAAGAAAGAGGCAGAAACTGGGAATAGTTGGTAAAGCCCTTGTTGAATCAGGTTTGGAGGAGGATACACTAAAGAAGCTTCCTCGGCGTGTTCGTCGGAGATATGAACTAAAGAAAAACCTAGAGAATGGTTTCTGCACTTCTGGGGATGGAACCAAGAGGCTGAGAACTCATGTTTGGCATGCAAAGCGGTTTTCTATGACCAAGCTTTGGGGTTACCATCTTCCGTTGTGTCTTCAAGGAAGAGGGAAAGGTTCGAGGGCAATCTTGAAAAGGCTCAAACAAGGGGTGCTTGTGCACGATGCAAGCTATTATTCTGCTATCCAATTGGAGGGTCCAGAGGATTCATTACTGTCAGTATTAAGATTGGTACTAGAACCCTCTCCAGCAAGAACAACACATACTGGAAATCATGATGACTCTGTTCTTTCTGGTGTAACCTATGGAAGTGCAATGCTGCATCATGTTGGAGCCCCAATTTCTCCTCCAATTGCTCCTGTGACCTATATGTGGCAACCAACTTCCCAAGAAAATATGAGTACACAGCTAGATGGACGAGATCATTATATTTCTTGTGGACAAAATGGTGCCAATAACGATTCAAACAAACATGATGTTGAATTATGTGAAAAATCAGACAATATGAAGCATGGTTCTTCATTTAGACACCTTTGGGTGTGGATACATGCTTCTGCCTTTGAAGAAGGATACGATAATCTAAAAGTTGCCTGTCGGAAAGAGATGGAGAAGAGGGGCATTATAATTAATTGCTTTTCCCTTGAGGGTCAACTTGCAAAATTAGAATTAATTGGATTAGGGACATTTCAGCTTCTTCAGAAGATGCTGCATCCTGTCGGAGGTATTTCAGAGAATCATTGGCAATTAAAGAAACATATGACAATGGAAGAAGAGTGTGTTTCTCAGAATAAAAATTCAAGAACACTGAAAAATGGAGATCATTTCTCTTCTTGTGCTATGATACCTCTTAATGTCAAGGATCCTCGAGAATTGCCTTGGAAGAGGAATGCTGTTCCAATAGGGTCCATTTCAATTAAGACTTTGAGTAACGAACAGGAAACAAAATGCAAAGAACTTGCTGATTTGGAAGGAAATTTGGAAGAGAATAAAGAATCATCTTCATTATCATGTTCAAAACTTGAAGACAGCCAGTCTAATATTGATGATTTGTGGTATGCTACGACCAGAGGGTTGAGGCCCCCATTGGAAGACAGTGTCCTTTCCAAGGAGAAACACCATAAACATATGACTAATTTCTGCCTTGATGATATAGATTCTGGAGAGGCTAACCCTTCAACTAAGGTGCAGTGTTTGAGATCTTGCCCTATTCTTCTTTTAAAAGGTGATACGAAGGAAATGATCATAGGATGGTCCATTATACTTCCCTTAAGTTGGGTCAAAGCATTCTGGATTCCACTCATCACCAATGGGGCACATGCAATAGGTTTGCAAGAGAAGCACTGGGTTACATGTGAAATTGGGCTACCATTTTTTCCTTCAGATTTTCCAGATTGTAAGGCATACTCTTGCTTAATGGAAGATAAGGCTGTTGCATTTAATAAAAAGGAAGAACTTCGTCCTCCATCCGTTAGGCATTTGAGAGTTCCCATCCAACCTCCATGGGGTATTGTTAACATCACTTTCAACAAAATGATTAGTGCAATGGAAACTCCTGATCTTTCAACTAGGGAAGATTTGACCATCACTAATTTATCACCAAATCCTTTTCCTTTAAGCTTTAAAGTTTCAAACTCTCCCTCTTGGAGTAATTTGTTTGATGGAACTGTGGTTAGGACAGGTTGTATGCTGACCACTTTCCTCAATGAAACAAAAGCTGGTCAATTGTTATTGTTTCCTTATGCAGCTGATGGAGAGGCTAGAATCTCCAAGTTTATTAATGGAGAACTAAAGCTTGACCCAAGGTACAAAAGCTCTGACATATATGACCATAAGCTATGTTTTGTAAGAGTTCATCTTCATCCATTCAAGGAAGGATGTTTTGAAGAAGGTGCAGTTATTTGTGCACCATATCCTTCTGATATATTTTTATGGACTTCAAGTTCAGAGAGAAGTGAAGAGGGACTTCAAATGTCTCAGTCTGCAATGCGATCATACTTCAAAGAACATTCCTCTGGTAGATGGGAAATGCAGATACCAGATGATTCAATTTCTAGCAAGTCTCACCGTTGGCCTATTGGCTTTGTCACTACAGCCTCTGTTCAAGGAAGCAAGAGTCTTGTAGCTGAGGGCTTTTGCGAGGCCGTTTTACTATCTCATTTAAGAGAGGAACAGTGGAAGGAGATGGCTATGAAGCAGAGGAGGAGGGAAATATACGTACTTGTCAGGAATTTGAGATCTACAGCATACAGACTTGCTTTTGCTTCTATCATTCTTGAATTTAAGGAAAATGATATCGAGTTCTTATAA 2646 0.3998 MVAEGTKRPQLSLPRKINVQKYAESRALELQSLQSIIENRVSNDYRSQRNKRRRTTAFDNQIARKGCRRKRQKLGIVGKALVESGLEEDTLKKLPRRVRRRYELKKNLENGFCTSGDGTKRLRTHVWHAKRFSMTKLWGYHLPLCLQGRGKGSRAILKRLKQGVLVHDASYYSAIQLEGPEDSLLSVLRLVLEPSPARTTHTGNHDDSVLSGVTYGSAMLHHVGAPISPPIAPVTYMWQPTSQENMSTQLDGRDHYISCGQNGANNDSNKHDVELCEKSDNMKHGSSFRHLWVWIHASAFEEGYDNLKVACRKEMEKRGIIINCFSLEGQLAKLELIGLGTFQLLQKMLHPVGGISENHWQLKKHMTMEEECVSQNKNSRTLKNGDHFSSCAMIPLNVKDPRELPWKRNAVPIGSISIKTLSNEQETKCKELADLEGNLEENKESSSLSCSKLEDSQSNIDDLWYATTRGLRPPLEDSVLSKEKHHKHMTNFCLDDIDSGEANPSTKVQCLRSCPILLLKGDTKEMIIGWSIILPLSWVKAFWIPLITNGAHAIGLQEKHWVTCEIGLPFFPSDFPDCKAYSCLMEDKAVAFNKKEELRPPSVRHLRVPIQPPWGIVNITFNKMISAMETPDLSTREDLTITNLSPNPFPLSFKVSNSPSWSNLFDGTVVRTGCMLTTFLNETKAGQLLLFPYAADGEARISKFINGELKLDPRYKSSDIYDHKLCFVRVHLHPFKEGCFEEGAVICAPYPSDIFLWTSSSERSEEGLQMSQSAMRSYFKEHSSGRWEMQIPDDSISSKSHRWPIGFVTTASVQGSKSLVAEGFCEAVLLSHLREEQWKEMAMKQRRREIYVLVRNLRSTAYRLAFASIILEFKENDIEFL 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00055 881 ProSitePatterns Neurotransmitter-gated ion-channels signature. 564 578 IPR018000 -
Spst11g00055 881 PANTHER RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1 12 869 IPR039182 GO:0000172|GO:0001682|GO:0005655
Spst11g00055 881 Pfam Ribonucleases P/MRP protein subunit POP1 122 179 IPR009723 -
Spst11g00055 881 Coils Coil 418 438 - -
Spst11g00055 881 Pfam POPLD (NUC188) domain 529 604 IPR012590 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00055 Spst-Chr11 986757 991473 Dispersed