Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00053 ATGAAGATTCACAATGACTTGGATAATTCTTCTTATAGTTCTATACCATTTTCATTTAATATTCGGGTAGTCCGACCCAACCCTAAGCCAATCCGAACTATAAAGAGGTGGGTCGACCCAATATTGACCCGACGAGTCTTCTTCTTCACAATTCAAACACCGCTCCGCTGCAACACTCTTGGGTGTGAAGAGGTGCCCAAACAAAGCAAAGGCGTGGTAAAGCAACACCGCAATGCCTCTACAACGATGCGCAATTCAAAGCTTGCAGTCTCTCTCCTCGTAGCACGTGCCAAGTCACTCCAACTTCATCACCACACGTGTCACTGCGTAGCTTCTTCCTCTTCTCCGGCCTCTACTCCACTCTTCAGGTTTCTCCCTTCTTCCTTACGAAACTCGAAGTCCCTCGTCTCCGCGCGACTCTTCTCCAGCTATTACTCACTCGAACAGTTCTCCGATGATGAATACGACTGTGACTTCGAGAATCAGCAGGTATCGTCTACAGTGGCTAATGTGGATGAGTGGAAATGGAAACTCAGCATGCTGTTACGCAGTGAAAAGGAACAGGAGATTGTATCAAGAGATAGAAAAGATAGGAGGGACTATGAACAAATAGCTAACCTTGCCAAAAGAATGGGGCTATACAGTGAGTTGTTTGGAAAAGTGGTCGTTGCAAGCAAGGTGCCTCTTCCTAACTACCGTCCAGATTTGGATGACAAACGTCCACAAAGAGAGTTGGTGATTCCACTAAGCTTGCAAAGGAGAGTAGAGGGTTTGCTGCAGGAATACCTTGATAGACTTCAGTTGAATTCTGCAAAGACAAATGAGAGCCTGGATGATGTGAACTCCGCCAATCAAGTTAAAAAATTAGACATGGATGAAAGTGATGATACTTTTGTGGATGAATCTGTTATGGAAAAGGTTCTCCAAAAGAGGAGTTTGAGGATGCGTAACATGCAAAGAGCTTGGCAGGAATCACCTGAAGGCAGGAAGATGCTGGAATTCCGGAAGTCTCTACCATCGTTCATGGAAAAACAAGGTTTACTTCAAGCTATAGCACATAATCAGGTGATAGTTATATCTGGAGAGACTGGCTGTGGTAAAACCACTCAACTTCCTCAATATGTATTAGAATCAGAGATAGAGTCTGGTCGTGGAGCATTTTGTAGCATTATTTGCACGCAGCCTCGAAGGATATCTGCCATGACAGTTTCCGAGAGGGTGTCAGCCGAGCGGGGAGAGCCTCTTGGTGAAACAGTTGGCTTCAAAGTTCGATTAGAAGGAATGAAAGGGAAAAACACCCATCTGCTATTTTGTACCAGTGGCATATTACTTAGAAGGTTACTGAGTGATCGAAACCTGAATGGTATAACCCATGTTTTTGTGGATGAAATTCATGAAAGGGGCATGAATGAAGACTTCTTATTAATTGTGCTAAAGGATCTGCTTCCAAGGCGTCGGGACTTAAGATTGGTTTTAATGAGTGCCACCTTGAATGCTGAGCTTTTTTCAAATTATTTTGGAGGTGCTCCTACATTTCAAATTCCGGGTTTCACCTATCCTGTTAGAGCTCACTTTTTAGAAGATGTGTTGGAAATTACTGGATATAAATTAACTTCCTTCAACCAAATTGATGATTATGGTCAAGAGAAGCTGTGGAAAACACAAAAGCAACTTGCACCACGCAAGAGAAAAAATCAGATCACTTCTCTTGTTGAGGATGCTCTTTCTAAATCAAGCTTTGAGAACTACAGCTCCAGGGCACGTGATTCACTGGCATCTTGGGCCCCTGACTGCATAGGGTTTAATCTCATTGAGGCTGTTCTGTGCCATATATGTCGGAAGGAACGGCCAGGTGCTGTCTTAGTGTTTATGACTGGGTGGGAGGATATAAGTTCTTTACGAGATCAGCTTAAAGCGCATCCTCTATTAGGAGATCCCAATAGGATTCTACTTCTAACGTGTCATGGATCAATGGCAACTTCCGAACAGAAACTCATATTTGAGAAACCACCTCCAAATATAAGGAAAGTAATACTTGCTACAAATATGGCAGAGGCAAGTATTACAATCAATGACGTAGTTTTTGTGGTTGATTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTGAATAACACACCTTGTCTTCTACCTTCTTGGATATCACAAGCATCTGCACAACAGGCAAAATATAGCCTTTGGTGGAGGGAGCTGAGTGGGAAAAAAGGAAAAGTGCAGATTGATGATACAAGGGGGCTTTTTCCTATTACCATTGAGGCGTGGGCTAGGATCTATAGAAGAGGTAGGGCTGGTCGTGTGCAGCCAGGAGAATGCTACCACCTTTACCCCAAATGTGTTTATGAAGCCTTTTCTGAATACCAACTCCCTGAACTACTGAGAACACCTTTAAACTCTCTTTGCTTGCAAATAAAAAGTTTGCAAGTCGAGAGCATAGGAGAGTTCTTATCTGCAGCTTTACAAGCACCAGAGCCACGAGCTGGTGTTGTTGGATTGGCAGAGGTTGAAAATGCTATTGGTTTTCTCAAGATGATTGGAGCATTAGATGAAAAAGAAAATCTTACAAATCTCGGGAACTTTCTCTCTATGCTTCCTGTAGATCCCAAGCTGGGAAAAATGTTAATAATGGGAGCTATATTTCGATGCTTTGATCCTGTTCTTACAATTGTAGCTGGCCTTAGTGTCAGGGATCCTTTCCTTTTGCCCCAAGATAAGAAGGATTTAGCAGGGACAGCAAAGTCTAGGTTCTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCGTATGAAGGATGGAAAGATGCAGAAAGAGAAGGATCGTCTTATGAATACTGCTGGAGAAATTTTCTCTCTGCCCAAACTCTTCAGGCTATTCATTCACTTCGGAAGCAGTTTAGCTTCATCTTGAAAGATGCTGGCTTGGTAGATGCAGATGCAAGCATGATTAACAAATTGAGTCACAATCAGTCTCTTGTGCGTGCAGTCATTTGTTCTGGACTCTTTCCTGGCATAGCATCAGTGGTGCACAGGGAGACATCCATGTCATTTAAAACAATGGATGATGGCCAGGTTTTATTATATGCTAATTCAGTGAATGCACGTTACCAGACCATTCCTTACCCATGGTTGGTTTTTGGTGAGAAAGTTAAGGTCAATGCTGTTTTCATCCGTGATTCCACTGGTGTATCTGATTCAATACTTATACTTTTTGGTGGTGCTCTGAGTAATGGGATACAGGCAGGGCATCTGAAAATGTTAGATGGATATGTTGACTTCTTCATGGATCCTAATTTAGCTGACTGCTATTTGAAGCTTAAGGAAGAGCTCAATAAGCTTATCCAGAAGAAGCTTGAAGATCCTAACGTTGACATTCACAAGGAAGGGAAGTACTTGATGCTTGCTGTTCAGGAGCTGGTTTCAGGGGATCAATGTGAAGGAAGATTTGTTTTTGGCCGTGAAAGCAGGAAGCCCAAGGCCTCTAATGATGAAAACAAATTCACAAAAGATGGGACAAATCCCAAGAGCTTGCTGCAAACATTGTTGATGCGAGCAGGACACTCCCCACCAAAATACAAAACGAAACATCTCAAGACGAATGAGTTTAGGGCACTGGTGGAGTTTAAGGGAATGCAATTTGTTGGCAAACCAAAGAGAAACAAGCAACTTGCAGAAAGGGATGCTGCTATAGAGGCATTGGCTTGGTTGACTCACACTTCTGACAATAATCAGCATGAAGATGATAACTCTCCGCCTGATGTCACTGACAACATGCTAAAACTCCTAGGGAAGCGCAGAAAATCAAAGCGACGCCATGATTGA 3843 0.4283 MKIHNDLDNSSYSSIPFSFNIRVVRPNPKPIRTIKRWVDPILTRRVFFFTIQTPLRCNTLGCEEVPKQSKGVVKQHRNASTTMRNSKLAVSLLVARAKSLQLHHHTCHCVASSSSPASTPLFRFLPSSLRNSKSLVSARLFSSYYSLEQFSDDEYDCDFENQQVSSTVANVDEWKWKLSMLLRSEKEQEIVSRDRKDRRDYEQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQRELVIPLSLQRRVEGLLQEYLDRLQLNSAKTNESLDDVNSANQVKKLDMDESDDTFVDESVMEKVLQKRSLRMRNMQRAWQESPEGRKMLEFRKSLPSFMEKQGLLQAIAHNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMTVSERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGGAPTFQIPGFTYPVRAHFLEDVLEITGYKLTSFNQIDDYGQEKLWKTQKQLAPRKRKNQITSLVEDALSKSSFENYSSRARDSLASWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISSLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNIRKVILATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASAQQAKYSLWWRELSGKKGKVQIDDTRGLFPITIEAWARIYRRGRAGRVQPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRAGVVGLAEVENAIGFLKMIGALDEKENLTNLGNFLSMLPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSAQTLQAIHSLRKQFSFILKDAGLVDADASMINKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDGYVDFFMDPNLADCYLKLKEELNKLIQKKLEDPNVDIHKEGKYLMLAVQELVSGDQCEGRFVFGRESRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDNSPPDVTDNMLKLLGKRRKSKRRHD 1280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00053 1280 Pfam Helicase associated domain (HA2) 844 917 IPR007502 GO:0004386
Spst11g00053 1280 FunFam DExH-box ATP-dependent RNA helicase DExH3 291 516 - -
Spst11g00053 1280 FunFam DExH-box ATP-dependent RNA helicase DExH3 599 762 - -
Spst11g00053 1280 SMART ha2_5 843 934 IPR007502 GO:0004386
Spst11g00053 1280 MobiDBLite consensus disorder prediction 1247 1280 - -
Spst11g00053 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 954 IPR027417 -
Spst11g00053 1280 MobiDBLite consensus disorder prediction 1160 1177 - -
Spst11g00053 1280 SMART ultradead3 336 529 IPR014001 -
Spst11g00053 1280 SMART helicmild6 631 774 IPR001650 -
Spst11g00053 1280 FunFam Putative ATP-dependent RNA helicase DHX36 816 928 - -
Spst11g00053 1280 Pfam Double-stranded RNA binding motif 1181 1243 IPR014720 -
Spst11g00053 1280 SUPERFAMILY dsRNA-binding domain-like 1174 1255 - -
Spst11g00053 1280 CDD DEXHc_RHA-like 354 514 - -
Spst11g00053 1280 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1000 1081 IPR011709 -
Spst11g00053 1280 FunFam DEA(D/H)-box RNA helicase family protein 1162 1248 - -
Spst11g00053 1280 Gene3D - 601 793 IPR027417 -
Spst11g00053 1280 Gene3D - 1160 1248 - -
Spst11g00053 1280 Gene3D - 822 924 - -
Spst11g00053 1280 PANTHER ATP-DEPENDENT RNA HELICASE 294 1099 - -
Spst11g00053 1280 Pfam Helicase conserved C-terminal domain 606 705 IPR001650 -
Spst11g00053 1280 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 348 515 IPR014001 -
Spst11g00053 1280 Gene3D - 286 516 IPR027417 -
Spst11g00053 1280 CDD SF2_C_RHA 592 782 - -
Spst11g00053 1280 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 603 814 IPR001650 -
Spst11g00053 1280 MobiDBLite consensus disorder prediction 1160 1180 - -
Spst11g00053 1280 SMART DRBM_3 1181 1244 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00053 Spst-Chr11 941308 975382 Transposed