Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00050 ATGGCACCAAAACCAGTTTCCCTTTCACATTTACTCCTTTTAATCTTGTTTCTTGCCACCATTCAACTTTCAGAGCAGTTAGAGTTTCCTCAGTCTCAAACACTTCTCAAGGTTCAGCAACTTCTTGGCTATCCATCAACATTAAGTACCCTCAGCAGCACCTCAGAGTTTTGCAATATTGAACCTACCCCATATTTGACACTAGTTTGCTATGAGAATAGCTTGACACAGTTGCATGTCGTTGGCAACAATGAGTATACTCCACTGCCTCCAGACTTCTCCTCAGATACTCTGTTCACTACACTAGGCACTCTATCAAGCTTGAAAGTCCTCTCCCTGGTTTCTCTTGGACTCTGGGGGGCCTTACCTGAAAGCATTTCTCAAATGTCTTCATTGGAAATACTTAACATTAGCTCAAATCACTTCAATGGAGCCATTCCATCTCAACTTTCACTTCTGAGGAACCTGCAGTCAGTGGTGCTTGATGATAACAACTTCAGTGGTGAAATTCCTAACTGGGTAGGCTCACTTCAAGGTTTGGCTGTGCTTAGTATGAAGAAAAACTGGCTTAGTGGGAGCCTTCCAACTTCATTGGACGCTCTTCATACCTTGAGGGTATTGGATCTATCATGCAATCAGTTATCTGGGGAACTTCCTCCTCTTAAGAACTTGGCAAACCTTCAAGTTCTGAACTTGGAAAACAACACATTTGGACCTCATTTTCCTTCTCTCCCCACCAAGTTAGTTTCTGTTGTGCTCAGAAATAACAGCTTCAGGCTAAGTGTCCCTTCTGGTTTGAGTTCTTTCTATCTCCTCCAAAGGCTGGACCTGTCATTGAATGGTTTTGTTGGGCCATTTCCACCATACTTGTTGTCACTGCCTTCCATAAATTACCTTGATATTTCGTCAAATAGATTCACTGGAATGCTTTTCAATAACATGTCATGCAATGATGATCTCCACTTCGTAAATCTGTCTTCAAATCTTCTGAAAGGGGAAATTCCCTCTTGTTTGGAACCAGAGACAAGGGTTGTTCTGTATGCTAGAAACTGCTTATCAAATAAAAACCAAGATCAGCACCCTTCAGGTTTCTGCAGCAATGAGGCTTTGGCAGTGAAAATCATACCCCATCAACCGAAGCACAAGAGAACAACTGGTAAAGCAGTTATTGTATCAAGTATGGGAGGTGTTGTTGGTGTAGTGTTGATTGTAGGGGTGGTTATCTTGGTTGTTAGCCGAGTTCATAAGAAACAAGTAGTGAAAATACCTTCAAAGTACCCTTTGCAAAATGTTACAAGTCAGATACATAATGAAGATGAAGTGAAAATTACTACTACAAGATCCATAATGGAGCATATCATGAAAAGGGTTCCTGACAAACGTGCTGTGGAAACACTAACAAGATCTATAAAGGAGCATGTAATGAGCCGAGTAAATAATAAGCGTGTTGTGAGAGCATCGACAAGGTCCATAATAGAACATGTATCATCAGTTAACACAGCAAAACTACTCACGGATGCAAGGTATATATCAGAAACAATGAAGATGGGAGCCAGCCTTCCTGCTTATAGGACCTTTGCTTTGGATGAACTGAAGGAAGCTACAAATAATTTTGATGCATCATGTTTCATAAGTGAAGGTCCACATGGTCAGATTTATAAAGGAGTTCTCTCAGATGGGATGCACATTGCTATTAGAGGTTTGAAAATGAGGAAGAGACATGGCTCTCAAACTTACATGCACCATGTTGAGATGATTTCGAAACTAAGGCATTCACACTTGGTTAGTGCTCTTGGGCATGCTTTTGAGTGCAACCAAGATGATTCAAGTGTGAACAATGTATTTCTAATATTTGAGTTTGTTCCAAATAGAAGCTTAAGAAGCTGCGTTTCCGGATCTTCTGGGGAAAAGATTTCTTGGACTCAGAGAATTGCAGCTACAATTGGAGTGGTGAAAGGCATTCAATTTTTGCACACAGGGATAGTGCCTGGACTATATTCAAATAATCTCAAGATAACAGATATTCTCTTGGATAGCAATCACAATGTTAAAATAAGCAGTTACAATCTGCCACTCTCTGCTGAAAATAAAAGAACGATCAGCAGTGGAACTTCCCCTGGACTCAAAGGAAATGTCCAAGCAAGGTTAAAAGATGAAGACAAGAATGATGTCTATGATATTGGGGTAATCTTGCTAGAAATAATTCTGGGCCGACCAATAATATTTCACAATGAAGTTGGAACACTAAAAGATCTTTTACATGTAAGCATCAAAACTGATGACATAGCTAGAAGGAGCATTGTTGACCCAGCAGTTCACAAGGAGTGTTCAGATGAATCATTAATGACAATGATGGAGATATGTGTAAGGTGTCTCTCTGGTGACCTAAGTGAGAGGCCTTCTGTAGAAGATATTCTCTGGAACTTGCAGTTTGCAGCACAAGTTCAGAACTCATGGAGAAGAGACTCAAGTGATCACAGTTACTCTCCTGCACCATCTTCCATGGACACATGA 2514 0.4053 MAPKPVSLSHLLLLILFLATIQLSEQLEFPQSQTLLKVQQLLGYPSTLSTLSSTSEFCNIEPTPYLTLVCYENSLTQLHVVGNNEYTPLPPDFSSDTLFTTLGTLSSLKVLSLVSLGLWGALPESISQMSSLEILNISSNHFNGAIPSQLSLLRNLQSVVLDDNNFSGEIPNWVGSLQGLAVLSMKKNWLSGSLPTSLDALHTLRVLDLSCNQLSGELPPLKNLANLQVLNLENNTFGPHFPSLPTKLVSVVLRNNSFRLSVPSGLSSFYLLQRLDLSLNGFVGPFPPYLLSLPSINYLDISSNRFTGMLFNNMSCNDDLHFVNLSSNLLKGEIPSCLEPETRVVLYARNCLSNKNQDQHPSGFCSNEALAVKIIPHQPKHKRTTGKAVIVSSMGGVVGVVLIVGVVILVVSRVHKKQVVKIPSKYPLQNVTSQIHNEDEVKITTTRSIMEHIMKRVPDKRAVETLTRSIKEHVMSRVNNKRVVRASTRSIIEHVSSVNTAKLLTDARYISETMKMGASLPAYRTFALDELKEATNNFDASCFISEGPHGQIYKGVLSDGMHIAIRGLKMRKRHGSQTYMHHVEMISKLRHSHLVSALGHAFECNQDDSSVNNVFLIFEFVPNRSLRSCVSGSSGEKISWTQRIAATIGVVKGIQFLHTGIVPGLYSNNLKITDILLDSNHNVKISSYNLPLSAENKRTISSGTSPGLKGNVQARLKDEDKNDVYDIGVILLEIILGRPIIFHNEVGTLKDLLHVSIKTDDIARRSIVDPAVHKECSDESLMTMMEICVRCLSGDLSERPSVEDILWNLQFAAQVQNSWRRDSSDHSYSPAPSSMDT 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00050 837 SUPERFAMILY Protein kinase-like (PK-like) 517 811 IPR011009 -
Spst11g00050 837 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 512 620 - -
Spst11g00050 837 Gene3D Phosphorylase Kinase; domain 1 498 620 - -
Spst11g00050 837 Gene3D Ribonuclease Inhibitor 150 242 IPR032675 -
Spst11g00050 837 Gene3D Ribonuclease Inhibitor 30 149 IPR032675 -
Spst11g00050 837 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 107 822 - -
Spst11g00050 837 FunFam probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 151 244 - -
Spst11g00050 837 ProSiteProfiles Protein kinase domain profile. 538 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00050 837 Pfam Leucine rich repeat 154 214 IPR001611 GO:0005515
Spst11g00050 837 ProSiteProfiles Leucine-rich repeat profile. 203 225 IPR001611 GO:0005515
Spst11g00050 837 Gene3D Transferase(Phosphotransferase) domain 1 621 829 - -
Spst11g00050 837 SUPERFAMILY RNI-like 70 341 - -
Spst11g00050 837 FunFam Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 246 370 - -
Spst11g00050 837 Pfam Protein kinase domain 545 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00050 837 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 621 825 - -
Spst11g00050 837 FunFam probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 30 150 - -
Spst11g00050 837 Gene3D Ribonuclease Inhibitor 243 344 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00050 Spst-Chr11 906290 911277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00050 474 834 Miscellaneous Gene Families AT3G03770 57.493 4.19e-136 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Spst11g00050 Pkinase 6.3e-16 CL0016