Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00023 ATGGAAGAAGGGTTGTGCCAGGACTCGGTTCATGGTTCTGGTTTGGTTGATAAAACTAGGATTGTAGAGGTTAAACCCCTGCGTAGTTTGGCACCTATGTTACCAAAATCTCTTCAATCTTCTCTCTCTAGACGGTACCCTTCTAGGTTTTCTCCATTTGTTTTGTTTGAGGAACCTGAAGAGTCTCAGCCCTCACCTGCTCCCATACCAGCTCCAATAAGGTCCTTTAGGAAACCACTAGATGAAGAAGAAATACCTCATGGAGTCAATGGAGACCCATCTTCACCCATGGATGGTCTCAATGGTAAGAGTGTCGACGATAACCAAAGGCGTATTGTGCAGCCTATGAACAGTTGCAAATCATCCCAAAAGAAGAGTAGGAAAATTCCAGAGTTTGGTTCAAGTTCTTTGATTGGTGGTATTAGTGTGGCCCAAAGAGATGATGGTGATCGCAAAGTGGTTACTCTTGTGCTCATGACTTTTGATTCTCTTCGGAGAAGGCTGTGCCAACTTGAAGATTCCAAGGAGTTGAACACAACTATGGTAATCAAGCGAGCAGATTTAAGAGCAAGCACTGTGATGACAGGCAAAGCTTTTCGAACAAACATGAAAAAGAGAGTAGGAGCAGTGCCTGGGATTGAGATTGGGGATATATTCTTTTTGAGGATGGAAATGTGTCTTGTGGGTTTACATGGCCAGTCAATGAGTGGAATTGACTATATGAACATAAAGGATGAGTTTCAGGAGGAACCTGTGGCTTTAAGCATTGTTTCGTCAGGAGTATATGATAATGATGCAGAGGATGATGATGTTTTAATTTATAGTGGACAGGGTGAGAACTTCAACAAGAAAGATAAACACGTGATTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTAGATAGAAGTTCACATCGCCATAATGAAGTAAGAGTCATCCGGGGCTTGAAAGATGCTGGGAATAAAAATGTAAAAATCTATGTCTATGATGGTCTGTATAAAATTGAAGATTCTTGGATAGAGAAAGGAAAGTCTGGTGGTGGTGTATTCAAGTACAAGTTTGTTAGATTGCCGGGGCAACCTAGTGCTTTTGCTGTTTGGAAATCAGTTCAAAAATGGAAGACAGGCTCATCTTCAAGGCCTGGCCTTATTCTTGGAGACCTCTCCACAGGAGTTGAGAGTATTCCTGTATCACTTGTCAATGATGTTGATAGTGAGAAGGGGCCTTGTTTTTTCACCTATACCAAATCTATCATAGATCCAAAACCATTCAGTTTAGTGCAATCTTCATATGGCTGCAACTGTAACAAAACATGTGTCCCTGGTGATTTGAGCTGCTCTTGCATTCAAAGAAATGAAGGTGACTTTCCATATATTGCAAATGGTGTTCTAGTGAGTCGGAGACCATTGGTTCATGAGTGTGGCCCAATGTGTAAGTGCTTTCCTAACTGCAAGAACCGAGTAACGCAGACAGGTTTGAAGCATCAAATGGAAGTTTTCAAAACCAAAGATAGAGGGTGGGGACTTCGATCACTTGATCCTATACGTGCTGGTACTTTTATTTGTGACTATGCAGGAGAATTTATTGACAGAGCCAAGGTAAATAATGGGGGATATGATGATGAGTATGTTTTTGATACAAGTCGTATTTACAACCCATTCAAATGGAATTATGATCCTAGCTTATTGGAAGAAATAAGCTCAAATGTCTCTAGTGAGGATTATACTATACCGTCACCTCTAATTATCAGTTCTAAGAACTATGGAAATGTGGCTAGATACATGAATCATAGTTGCTCTCCTAATGTTTTCTGGCAGCCAGTCTTGTATGCTGAAAATAATCAATACTTTCTTCACATTGCATTTTTTGCCCTCAGACACATTCCTCCAATGACAGAGTTAACATATGATTATGGATGTTCTGGTCATGCTGATGATAGCAGTGCACCCCAAGGGAGAAAAAAATGCTTATGTGGATCCACAAAATGCTATGGTTCTTTTGGTTGA 2007 0.4061 MEEGLCQDSVHGSGLVDKTRIVEVKPLRSLAPMLPKSLQSSLSRRYPSRFSPFVLFEEPEESQPSPAPIPAPIRSFRKPLDEEEIPHGVNGDPSSPMDGLNGKSVDDNQRRIVQPMNSCKSSQKKSRKIPEFGSSSLIGGISVAQRDDGDRKVVTLVLMTFDSLRRRLCQLEDSKELNTTMVIKRADLRASTVMTGKAFRTNMKKRVGAVPGIEIGDIFFLRMEMCLVGLHGQSMSGIDYMNIKDEFQEEPVALSIVSSGVYDNDAEDDDVLIYSGQGENFNKKDKHVIDQKLQRGNLALDRSSHRHNEVRVIRGLKDAGNKNVKIYVYDGLYKIEDSWIEKGKSGGGVFKYKFVRLPGQPSAFAVWKSVQKWKTGSSSRPGLILGDLSTGVESIPVSLVNDVDSEKGPCFFTYTKSIIDPKPFSLVQSSYGCNCNKTCVPGDLSCSCIQRNEGDFPYIANGVLVSRRPLVHECGPMCKCFPNCKNRVTQTGLKHQMEVFKTKDRGWGLRSLDPIRAGTFICDYAGEFIDRAKVNNGGYDDEYVFDTSRIYNPFKWNYDPSLLEEISSNVSSEDYTIPSPLIISSKNYGNVARYMNHSCSPNVFWQPVLYAENNQYFLHIAFFALRHIPPMTELTYDYGCSGHADDSSAPQGRKKCLCGSTKCYGSFG 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00023 668 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 101 661 - -
Spst11g00023 668 Gene3D SET domain 377 667 IPR046341 -
Spst11g00023 668 Gene3D - 190 376 IPR036987 -
Spst11g00023 668 Pfam SET domain 506 639 IPR001214 GO:0005515
Spst11g00023 668 Pfam Pre-SET motif 389 487 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst11g00023 668 ProSiteProfiles YDG domain profile. 208 356 IPR003105 -
Spst11g00023 668 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 668 IPR025794 GO:0016571
Spst11g00023 668 SUPERFAMILY SET domain 394 665 IPR046341 -
Spst11g00023 668 SUPERFAMILY PUA domain-like 190 378 IPR015947 -
Spst11g00023 668 ProSiteProfiles Pre-SET domain profile. 431 492 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst11g00023 668 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 190 375 - -
Spst11g00023 668 ProSiteProfiles Post-SET domain profile. 652 668 IPR003616 -
Spst11g00023 668 MobiDBLite consensus disorder prediction 83 102 - -
Spst11g00023 668 ProSiteProfiles SET domain profile. 495 639 IPR001214 GO:0005515
Spst11g00023 668 SMART preset_2 385 479 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst11g00023 668 SMART set_7 495 645 IPR001214 GO:0005515
Spst11g00023 668 SMART G9a_1 203 360 IPR003105 -
Spst11g00023 668 Pfam SAD/SRA domain 207 360 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00023 Spst-Chr11 394092 396098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00023 62 668 Su(var)3-9 homologs AT5G04940 55.501 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst11g00023 SAD_SRA 2.9e-47 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00023 11 394092 396098 Spst11g00023 11 394092 396098 ECH