Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00009 ATGGAGGATTATCTGGATTTGCTTTGGTTCCAAGCACGAACATACATTGTAGTGGGAAGTAACTGCCAGAACACCACTCAACAACGTCTTAGCAATGTTTACCAAACAAATCTTGAGAAGATTCTGACATGGGCATCCTCAGATGCAGCCATAAGCAAAGGTTATAACTCCAAAAGCATATCCAACAGCAGTCCTTTGTATGCCCACTATGATTGTCGTGGTGATGTGGTTGGATACTTTTGTCAATTCTGTGTCTCTAATGCGGCCAGAGAAGTTCCTCAGCGCTGCCCCAATAGGGTCTCTGCTATGGTTTGGTATGATTTCTGCATTCTAAGGTACTCCAATGAGAACTTCTTTGGGACAATTTTAACAAACCCATCATGGCATGCTCTTGGAGAGAAAAACATATCCAACATGAAAGATATTCTGAAAGGTGTGGATTTTTTGAGAAGCTTGATCAGAAAAGCAACTGTGGAGACCCACAAGTTGTGGTACATGGATGGCTTCAATTTGAGTTCCACTCAGAAAAGGTACGGGTTCGTGCAATGCTCTAGAGATCTCACAAATGATGGGTGCATAGAGTGTTTGGAGGCCATGTTAGCGGAAGTTCCCAAATTTTGTGAACAAAAATTAGGCTGTTTCATTTGGTCTGGAACTTATGGGCTTAGTCTATCATCATTTCATAAAATTCAGACGGAGGAAACATTGAACACTGACCTGCCTATAATCCCATTAATCACAATTCTACAGAGTACTGATAACTTTTCAGAAGCATATAAATTGGGGGAAGGTGGATTTGGCTCCGTTTACAAGGGAATTCTACCAGATGGAAGACAAGTTGCAGTCAAAAGGCTGTCAAAATTTTCTGGTCAAGGCTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCTAAATTGCAACATCGCAACCTTGCTTGGAGAATATGGTGTGAAGGAAAATGTTTGGAGTTGATGGATCCAATTCTGGAAAAATCCTTCAAAGCCAGTGAAGTTGAGAAGTGCATACACATTGCTTTGTTGTGTGTTCAAGAAAATGCAACAGATAGACCAACCATGTCCGATGTGGTGGTAATGCTAGGGAGTGACAAAATGGACCTTCCAAAAGCCAAGCACCCTGCATTTTCAATTGGAAAAAAGGCCTCAAAGGAAGTAACTACATCAAAAAGATTCAAGAATCTTTTCAATAATGATGTAACAATCTCTATTACTTTACCGAGTTCAATGTGTGTTCCAATAAGTGCTCTTGGAACTACTTCTTCGTATATATATGCTTGTGAATGA 1302 0.4017 MEDYLDLLWFQARTYIVVGSNCQNTTQQRLSNVYQTNLEKILTWASSDAAISKGYNSKSISNSSPLYAHYDCRGDVVGYFCQFCVSNAAREVPQRCPNRVSAMVWYDFCILRYSNENFFGTILTNPSWHALGEKNISNMKDILKGVDFLRSLIRKATVETHKLWYMDGFNLSSTQKRYGFVQCSRDLTNDGCIECLEAMLAEVPKFCEQKLGCFIWSGTYGLSLSSFHKIQTEETLNTDLPIIPLITILQSTDNFSEAYKLGEGGFGSVYKGILPDGRQVAVKRLSKFSGQGSEEFNNEVMFIAKLQHRNLAWRIWCEGKCLELMDPILEKSFKASEVEKCIHIALLCVQENATDRPTMSDVVVMLGSDKMDLPKAKHPAFSIGKKASKEVTTSKRFKNLFNNDVTISITLPSSMCVPISALGTTSSYIYACE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00009 433 ProSiteProfiles Gnk2-homologous domain profile. 16 118 IPR002902 -
Spst11g00009 433 FunFam Cysteine-rich receptor-like protein kinase 28 18 117 - -
Spst11g00009 433 Gene3D - 128 224 IPR038408 -
Spst11g00009 433 Gene3D - 14 118 IPR038408 -
Spst11g00009 433 Pfam Protein tyrosine and serine/threonine kinase 259 312 IPR001245 GO:0004672|GO:0006468
Spst11g00009 433 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 312 409 - -
Spst11g00009 433 Pfam Salt stress response/antifungal 22 115 IPR002902 -
Spst11g00009 433 ProSitePatterns Protein kinases ATP-binding region signature. 261 283 IPR017441 GO:0005524
Spst11g00009 433 Gene3D Phosphorylase Kinase; domain 1 225 321 - -
Spst11g00009 433 ProSiteProfiles Gnk2-homologous domain profile. 124 229 IPR002902 -
Spst11g00009 433 SUPERFAMILY Protein kinase-like (PK-like) 239 313 IPR011009 -
Spst11g00009 433 ProSiteProfiles Protein kinase domain profile. 255 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00009 Spst-Chr11 116429 122023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00009 311 381 Receptor kinase-like Gene Family AT4G21230 49.315 1.89e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst11g00009 Stress-antifung 2.8e-13 No_clan