Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00005 ATGTCTCCATCAGTGAAATCAAAATCCAAGTCCCAGGAGAAGGCCTCTGCAAGGGCTGGTAAGGAGCAGCAGAAGACTTCTCCAAAGACTTCCGTGTCTCCTACACATGGAAGTGACATTCTTGCTAGTGCACACAATCCCATCTTGGGAACATTTCAAACTCCAGAAACATCATTGGTTGCTTCTTCTACTCGAGTCCATGACAACAGTCATTTTCTGAAAGTAGATGATGCAGACGAGCATTCTAGTAGTCCTCAAGGAGCAGTGTCTGAGTGTGATACAGTTTCTATCAATGGAAGCTGCTCTGGTGACTCAGAAGAGTCTAAAGAGAAGGTAGTGGTAACAGTCTCTTCTACTCGACCGGATAGCGTACCTGGCTGTGATAATGACAGAAGGGAGAAAATACGTTTGAAGAACGAGAGGAAACACCAGAGGCAGAGGGAAAGGAGAGCTCAAGAGTTGCATGACCGATGTCGTGGGTACCTATTGTCAAGAAAGCTAGAATCACTTGCACAGCAATTAGTGGCAATGGGGTTCTCTTCTGAACGAGCAACACTGGCCTTAATGTTAAACGATGGAAAATTAGAGCAATCAGTATCCTGGCTATTTGAAGCCAATGAAGAACAATCACAAACTAAGGATACTACTAGCCTTGTGAGCGAGGGTAATTTGAAAATTGACATAAGGGACGAGCTTGCTCAGATTTCTGCCTTGGAGGTGAAGTACAATTGTTCAAAGCAAGAGGTAGAAAGGGCAATTGTTGCCTGTGAAGGTGATCTTCAAAAGGCGGAAAATACCTTAAAAACACAGAAGCAAGAATATACAGGGTCCCAATCAAAGTCCGAAGATTCTGCACAGAACAATAATAGTCTGGTGAGAGGATTACCGGCAATGTCAGTTTCTATGCAGCAGAGAGGGAATGAAAGTGATTTTAACCATTACAGCAAGGAAGGTGGTTCTGATTCTATGTTCCCAGATCTTGAAATCGGGAATGTACAGTCTCTACAACCGAATCATCCAAATGTAATGACAGAGAAAAGATGGAATGGTGTTCCAGGATCAAGCCCTTCTTCTGCTATGTTAACCATGGCACCATCCATGCAATCAGTGTCCCCATCGGTTAAAATGGAGGGTGGCCGGCCTATTGGCATTACAAACGAAGGAAGAATGATTCATCAAGGACTAGGAAGGGAGCCGATAATGATGCAACATCTACAATTCACAAATGCCAAACAGAACTCTATGGTTTCTTTAAATTCCTTTCCATCAGGAGCAGCAGGGTGGTATGTAAATAGCATTCCAGGTGTTGAAAATGTGAGGTCAAATGGGAAGTTACTACAAACTCAAAGTGTAAGAAGTGTTAGTCCAAATCATTTGGAGCAATTTTGTCAAGCTCCTTACAAAGAATATTCTCATTTCTTTGGACCAGTAGATTACTCATCTGCTGGGGTGGGTGGTTTCTGCAAGCCAATGGGTGCATCATCATCACCTTCACCTTCCATTCCCCCTCGTCATCAAGGTTCATGGAGCTCGAATGCGCCTTCACCTGCGCTTGCAGTGCCAACCTCCCTTGGACTATTTTCTGGTCATCAGAATGCAGCCAGAACATTCAACTCACATTCACACATGGATTGGAATACTGGGGGCTTAATGCCAGAATTTGATTACACCAGCATAGATTGGAGTTTGAATGTGCCATCTTCTTCGGGTGGACCGTGTCTAGGGATCTCTTCATTGTTGAGAAACAGTTACGGAAATAGGAGAATCAGTCCCTGCATGGGTGGATTGCAAAATGTTGGCATGGCTAGGGAAACTTCATCATCTGCTGGATTGAGAGAGTGGACCTCTCCTTTTGCTGGGAAGGACTTATTCAGTGTTCCTAGGCAGTTTGTTACCTCTCCTCCTATGTAG 1911 0.4417 MSPSVKSKSKSQEKASARAGKEQQKTSPKTSVSPTHGSDILASAHNPILGTFQTPETSLVASSTRVHDNSHFLKVDDADEHSSSPQGAVSECDTVSINGSCSGDSEESKEKVVVTVSSTRPDSVPGCDNDRREKIRLKNERKHQRQRERRAQELHDRCRGYLLSRKLESLAQQLVAMGFSSERATLALMLNDGKLEQSVSWLFEANEEQSQTKDTTSLVSEGNLKIDIRDELAQISALEVKYNCSKQEVERAIVACEGDLQKAENTLKTQKQEYTGSQSKSEDSAQNNNSLVRGLPAMSVSMQQRGNESDFNHYSKEGGSDSMFPDLEIGNVQSLQPNHPNVMTEKRWNGVPGSSPSSAMLTMAPSMQSVSPSVKMEGGRPIGITNEGRMIHQGLGREPIMMQHLQFTNAKQNSMVSLNSFPSGAAGWYVNSIPGVENVRSNGKLLQTQSVRSVSPNHLEQFCQAPYKEYSHFFGPVDYSSAGVGGFCKPMGASSSPSPSIPPRHQGSWSSNAPSPALAVPTSLGLFSGHQNAARTFNSHSHMDWNTGGLMPEFDYTSIDWSLNVPSSSGGPCLGISSLLRNSYGNRRISPCMGGLQNVGMARETSSSAGLREWTSPFAGKDLFSVPRQFVTSPPM 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00005 636 SUPERFAMILY UBA-like 168 208 IPR009060 GO:0005515
Spst11g00005 636 MobiDBLite consensus disorder prediction 21 40 - -
Spst11g00005 636 MobiDBLite consensus disorder prediction 83 103 - -
Spst11g00005 636 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 165 205 IPR015940 -
Spst11g00005 636 MobiDBLite consensus disorder prediction 270 289 - -
Spst11g00005 636 MobiDBLite consensus disorder prediction 304 323 - -
Spst11g00005 636 MobiDBLite consensus disorder prediction 492 514 - -
Spst11g00005 636 Coils Coil 246 280 - -
Spst11g00005 636 MobiDBLite consensus disorder prediction 77 152 - -
Spst11g00005 636 SMART uba_6 167 204 IPR015940 -
Spst11g00005 636 Coils Coil 127 147 - -
Spst11g00005 636 PANTHER UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B PROTEIN 1 634 - -
Spst11g00005 636 MobiDBLite consensus disorder prediction 1 63 - -
Spst11g00005 636 MobiDBLite consensus disorder prediction 47 63 - -
Spst11g00005 636 Gene3D - 128 218 - -
Spst11g00005 636 MobiDBLite consensus disorder prediction 493 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00005 Spst-Chr11 36156 38066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00005 4 292 EF-hand Containing Proteins AT5G12120 47.603 2.41e-76 254