Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00003 ATGAGGAAGAAGCTCGATACCCGTTTTCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTTGCTGTGCCTGTTCTAGTTTCTAAAGCTCTAGAACTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTCAGCAGGGTTCCTGACTACGGCCATGGCCATGGTCATGCTGAGGCTGGTGCTGATGACCGGGCCATTTCAAAAAGAAGGAAAGCTGCTGGTGATGATTGTAATGACAGTGATGAAGAGGCTAAGAGGAGCAAGATGCATGAGTTAAGCCATACTGGCAGTACTGGTAGAGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGCCGAGGACGGCCACCTTTAATAAGAGACACATATCACCAGGATGCTGAATCTGAGCCTTGCACTTCTGTTCAGCCAAGCAACCAACAAAATACAAACACAAGTGTTGCAATGGACAGTGGTTCTGAATCAAAGGATATACCAAAGGAGGAGAGTACTGCAGTTCCTGTTGTAAGCACTGATTCACTCCGGAACATTGATCTGAATGCCAGTACAAATGAAACCGATGACAAAAAGGCTAGCATGGCAGCTGATACCTCATTGCCGGAACCTCCAACAGAGAGCAAGCACGAAGAGATCCCGGGTTGGTCCCTTTCTGATGTGGACAAGATGGCCATTGATTCGATGCAGCTTGCACAGCTCGGTCGGCCACTAGAAGAGGAGGAGGAAGATTATGATGAGGAGGAGGGGTAA 864 0.4653 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHAEAGADDRAISKRRKAAGDDCNDSDEEAKRSKMHELSHTGSTGRGRGRGRGRGRGRGRPPLIRDTYHQDAESEPCTSVQPSNQQNTNTSVAMDSGSESKDIPKEESTAVPVVSTDSLRNIDLNASTNETDDKKASMAADTSLPEPPTESKHEEIPGWSLSDVDKMAIDSMQLAQLGRPLEEEEEDYDEEEG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00003 287 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 125 - -
Spst11g00003 287 MobiDBLite consensus disorder prediction 91 255 - -
Spst11g00003 287 MobiDBLite consensus disorder prediction 167 191 - -
Spst11g00003 287 FunFam dr1-associated corepressor homolog 1 86 - -
Spst11g00003 287 MobiDBLite consensus disorder prediction 91 137 - -
Spst11g00003 287 MobiDBLite consensus disorder prediction 205 220 - -
Spst11g00003 287 SUPERFAMILY Histone-fold 4 96 IPR009072 GO:0046982
Spst11g00003 287 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Spst11g00003 287 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00003 Spst-Chr11 17182 20840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00003 1 273 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.530 3.22e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Spst11g00003 CBFD_NFYB_HMF 2.1e-19 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00003 11 17182 20840 Spst11g00003 11 17182 20840 ECH