Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01469 ATGAAGGTTTTCGTGAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGAAGCCGAAAGACACGGTTTCTGACGTGAAGAGAAGTATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCACCAAGGAAAAGTTCTGAAGGATGCTACTACCTTGGAGGAGAATAATGTAGCTGAAAATAGTTTCATTGTAATCATGCTATCAAAGAATAAGAGCACATCTGGTGAAGGATCCACTACTTCAACTGCACCATCAGCTAAGGCACCCCAGACTAGTGCTCCTCCTACTTCAACCCCGCCAGTGTTAGCAGCAACTCAAGTTCCAGCTGCAACTGATGCACCGCCTGCAACTGTTGCTGCACCTGTATCTTCTCCTTCTCCAGCTCCAGCTCCAGCTCCAGCTCCTGCTTCAATTCCTGCAGGGACTGCTGTGGAGGAGTCTGATATCTATGGGCAGGCTGCATCCAATCTGGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTGTTGATATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGCGCTCTTCGAGCTGCCTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGTATCCCTGAGCAAGCCGAGGCTCCACTTGTAGCTCGAACACCTGCAGGTGCTCAACCAGCAAATCCTCCTGCTGCTGCTGCTCCACAAACAGCACAACCTGCTCCAGTTACCTCAACTGGACCTAATGCTAATCCTTTAGACCTTTTTCCCCAGGGCCTTCCCAATATGGGTTCTGGTGCTGCTGGTGCTGGCTCATTGGATTTTCTACGGAACAGTCAACAATTCCAAGCCCTGCGAGCTATGGTGCAGGCCAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGATTTCCTTCGTCTAATAAATGAACCTGTGGAAGGTGGTGAAGGGAATATATTGGGGCAGCTGGCTGGTGGCATGCCACAAGCGGTGACTGTCACCCCTGAGGAGCGCCAAGCAATTGAGCGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTCTTGGAGGTCTTCTTCGCTTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCACGAGTTCGATGAACAATAG 1212 0.4835 MKVFVKTLKGTHFEIEVKPKDTVSDVKRSIETVQGADVYPAAQQMLIHQGKVLKDATTLEENNVAENSFIVIMLSKNKSTSGEGSTTSTAPSAKAPQTSAPPTSTPPVLAATQVPAATDAPPATVAAPVSSPSPAPAPAPAPASIPAGTAVEESDIYGQAASNLVAGSNLEGTIQQIVDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARTPAGAQPANPPAAAAPQTAQPAPVTSTGPNANPLDLFPQGLPNMGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLAGGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFDEQ 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01469 403 MobiDBLite consensus disorder prediction 79 111 - -
Spst10g01469 403 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 168 211 IPR015940 -
Spst10g01469 403 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Spst10g01469 403 MobiDBLite consensus disorder prediction 225 253 - -
Spst10g01469 403 FunFam UV excision repair protein RAD23 homolog 349 397 - -
Spst10g01469 403 FunFam UV excision repair protein RAD23 1 80 - -
Spst10g01469 403 Pfam UBA/TS-N domain 173 208 IPR015940 -
Spst10g01469 403 Pfam UBA/TS-N domain 358 393 IPR015940 -
Spst10g01469 403 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 355 396 IPR015940 -
Spst10g01469 403 Gene3D - 163 213 - -
Spst10g01469 403 SMART uba_6 358 395 IPR015940 -
Spst10g01469 403 SMART uba_6 170 210 IPR015940 -
Spst10g01469 403 Gene3D - 268 333 IPR036353 GO:0003684|GO:0006289|GO:0043161
Spst10g01469 403 Pfam XPC-binding domain 277 332 IPR015360 GO:0003684|GO:0006289|GO:0043161
Spst10g01469 403 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Spst10g01469 403 FunFam UV excision repair protein RAD23 B 268 333 - -
Spst10g01469 403 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Spst10g01469 403 CDD Ubl_Rad23 1 74 - -
Spst10g01469 403 PRINTS DNA repair protein Rad23 signature 303 325 IPR004806 GO:0006289
Spst10g01469 403 PRINTS DNA repair protein Rad23 signature 352 368 IPR004806 GO:0006289
Spst10g01469 403 PRINTS DNA repair protein Rad23 signature 369 383 IPR004806 GO:0006289
Spst10g01469 403 PRINTS DNA repair protein Rad23 signature 384 399 IPR004806 GO:0006289
Spst10g01469 403 NCBIfam UV excision repair protein Rad23 1 401 IPR004806 GO:0006289
Spst10g01469 403 CDD UBA1_Rad23_plant 164 213 - -
Spst10g01469 403 Gene3D - 350 397 - -
Spst10g01469 403 MobiDBLite consensus disorder prediction 127 143 - -
Spst10g01469 403 SUPERFAMILY UBA-like 339 401 IPR009060 GO:0005515
Spst10g01469 403 MobiDBLite consensus disorder prediction 79 143 - -
Spst10g01469 403 FunFam UV excision repair protein RAD23 homolog 163 213 - -
Spst10g01469 403 Gene3D - 1 80 - -
Spst10g01469 403 CDD UBA2_RAD23_plant 354 396 - -
Spst10g01469 403 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 391 - -
Spst10g01469 403 SMART ubq_7 1 75 IPR000626 GO:0005515
Spst10g01469 403 SUPERFAMILY UBA-like 167 219 IPR009060 GO:0005515
Spst10g01469 403 SMART CBM 275 318 IPR006636 -
Spst10g01469 403 SUPERFAMILY XPC-binding domain 274 339 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01469 Spst-Chr10 15320599 15324546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01469 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 1.62e-09 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01469 10 15320599 15324546 Spst10g01469 10 15320599 15324546 ECH