Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01463 ATGCCCGAGCTTAGAAAAACACCTGCTTCTAAACTGAAGCAGAAGCTTCACCACTCCTTGCAAGAGTCCAAAGCGACGAGAAAACTGCGCATCATTTACAATGATCCTGATGCCACTGATTCATCCGATGATGAGCTTGAGAGGATCCAGAAGCAGAGAAAAACTAAGAGAAGCGTGTGTGAAATCCCTCTGCCTCCACTTCCTCGGACATTCACCACTCCTGAAACTAGTTCCTGTGAGGTGAATAGCAACAACAATGGTCAACCAGAAAGTAAGAGAAGGAACACTTCTGGAAAATATAGAGGTGTTAGGCAGAGAAAATGGGGTAAATGGGCTGCTGAGATTCGTGACCCTTTTCAGAGTACTCGATTATGGCTTGGTACATTCAACACTGCGGAGGAGGCTTCTCAAGCCTACGAAGCCAGGAGGCTTGAGTTTGAAGCCATGGCAAAGGCTAGAGCCTACAAAAATGTTTCTAGTTCTAGTCCTGGTTCTGATCCTTTGCCCACAAATTCTGAGAAGAGTATCTGCTGTAACTCTTCTGCTGCTGTGTCTGTGTCCGAGAAGTTTTCTACTACCTCTGACGATTCAGAAAGTGTGTTGTCACACCCTTCGCCTTCCTCTGTCCTTGAGTTGGATATCTCAGTTACCAAAGCCATTGACATGGGTAATTTTTCTAACGAGGAAGCTGTTGAGGCTAATGATTTGGTTGCTGAATTTGCTGATCTGGAAATTCCAGATTTGAGTACGTTGAACTTGCCCTTACCATATGACGGTACTACTGCTGTTACGTCTGAGACTGAGCTTGGACTTGATTTTGATTGGTTAGGTGAGGATTTCGGACAGGATTTTAATGATTTTGGTGGCTTGGAAGATATTCATATTTGTGGGATTGACAATGAGTCTAGTGAACTTCCTGATTTTGATTTTGGTGATCTATGTGCTGATGAGATTGCTGATAAAAAGTCTTCAAA 974 0.4363 MPELRKTPASKLKQKLHHSLQESKATRKLRIIYNDPDATDSSDDELERIQKQRKTKRSVCEIPLPPLPRTFTTPETSSCEVNSNNNGQPESKRRNTSGKYRGVRQRKWGKWAAEIRDPFQSTRLWLGTFNTAEEASQAYEARRLEFEAMAKARAYKNVSSSSPGSDPLPTNSEKSICCNSSAAVSVSEKFSTTSDDSESVLSHPSPSSVLELDISVTKAIDMGNFSNEEAVEANDLVAEFADLEIPDLSTLNLPLPYDGTTAVTSETELGLDFDWLGEDFGQDFNDFGGLEDIHICGIDNESSELPDFDFGDLCADEIADKKSS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01463 324 ProSiteProfiles AP2/ERF domain profile. 99 159 IPR001471 GO:0003700|GO:0006355
Spst10g01463 324 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 212 - -
Spst10g01463 324 MobiDBLite consensus disorder prediction 43 58 - -
Spst10g01463 324 SUPERFAMILY DNA-binding domain 99 146 IPR016177 GO:0003677
Spst10g01463 324 SMART rav1_2 99 165 IPR001471 GO:0003700|GO:0006355
Spst10g01463 324 Gene3D AP2/ERF domain 98 159 IPR036955 GO:0003700|GO:0006355
Spst10g01463 324 MobiDBLite consensus disorder prediction 1 34 - -
Spst10g01463 324 MobiDBLite consensus disorder prediction 1 103 - -
Spst10g01463 324 CDD AP2 99 146 IPR001471 GO:0003700|GO:0006355
Spst10g01463 324 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
Spst10g01463 324 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700|GO:0006355
Spst10g01463 324 MobiDBLite consensus disorder prediction 71 93 - -
Spst10g01463 324 Pfam AP2 domain 99 148 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01463 Spst-Chr10 15228960 15233524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01463 21 320 AP2-EREBP Transcription Factor Family AT1G68550 37.855 1.40e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst10g01463 AP2 1.7e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01463 10 15228960 15233524 Spst10g01463 10 15228960 15233524 ECH