Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01461 ATGAAAGCTCGAAACACAATTCAGTATAATCTTCTTACGTACCTCTACCAATCAGCCCATGCTCATCCACACGGAAAGTGGGTCACCACGGAAATCGCTCTGATTAGAGAGTCGGCCAATGAGAAAGCAGAGAATAGGATTAACTTTCCAAGCTCCTCCAATGAAAAACCAGATAAGGCGTTCCACTGTGGAGCCCAAAGTTCAATCCCTTTCACTGCTCAGGGTCCCAAAAGTGCAAATCCAAACAATCTCTCCCTGTTAAATGGACTGCAAAAGCGCCTCTTTATTGGCTTCAAATTTTGTTTGGGTGTTATGAGTACTGCTAAGAACGGGGAATACGCTGCTGTTGGGGGCAAAACGGCAAGAGCATGTGATAGCTGCATAACGAAACGGGCACGTTGGTACTGTGCTGCCGACGACGCTTTCCTCTGCCAAGCTTGTGACTCTTCGGTTCACTCTGCTAATCCCTTGGCCCGCAGACACGAACGAGTCCGCTTGAAAACGGCGTCGTACAAGTCCACCGACGAACAGCAGCAACAACCTCCCACTTGGCACACTAAGAAAGCTCGAACGCCCAGACATGGGAAACACTCTCGAAGCAACAACCCCTTTCATTTGGTCCCTGAAGTCGGTTCGGAAGAAGCGAATTCCCATGACGAGAACGAGGATCAGCTTCTTTATAGGGTCCCCATATTCGACCCTTTTGTTGCTGAGCCTTGTGGGACTAATAGTTCTTCTCCTTCTTCGGTGACTTCAACTGATCAAGGAGTGGCAGCTGCTGTCACCGAGGCTGAAAACAAAGGGGTTCGTAGCAATGTTTTTTATCACAGTAATAATGAGATGGAAAACTTGCATGGGATGCTTCCTTCCGATGCAGAACTTGCTGAGTTTGCTGCTGACGTTGAGAGTTTATTGGGTAGGGGGCTTGAAAACCAGTGTGTGGGGATAGAGGATTTGGGACTCATGGATGCGAAGGAGGAGGAGTGTTCCGTGGGTAGTGGAAAGGTGAAGGTGGAGGAGGAAGAGAGCCCTGAGATGGAGATGGAGATGGTGGGAAGAGATCTATCGTTTGAATTGAGCTTTGACTATGACACGTGTGACGAGGTGAAGGAGAAGGTTTGTGATTTGGAATTGGAACTGGGCAAGGATAAGGGGAATGAAGAAGAAGAACTGGGAGAGAATGTTGAGGGGAAAAGGAAGAAGATTTCGTTGCAGCTGGATTACGAGGCGGTGATTATTGCCTGGGCTAGCCAAAAGTCTCCGTGGACCACTGCTCACAAACCAAAGTTGGACCCCGATGAGTGCTGGCACCAATGCATGGAAACTTATGGAACAGCGATTCATCATCCTTATGGTGAAGTGGGTGGATTTGGGATTCATCCAGTGATAATAGACGGAGGCAGAGAGGCAAGAGTGTCAAGGTACAGAGAAAAGCGCCGAACAAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGAAAATTGAATGCAGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTGAAGAGGGCTTCCTTCGCAGCACCGACATTTCCTTTGCTAAATAAATAG 1572 0.4809 MKARNTIQYNLLTYLYQSAHAHPHGKWVTTEIALIRESANEKAENRINFPSSSNEKPDKAFHCGAQSSIPFTAQGPKSANPNNLSLLNGLQKRLFIGFKFCLGVMSTAKNGEYAAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYKSTDEQQQQPPTWHTKKARTPRHGKHSRSNNPFHLVPEVGSEEANSHDENEDQLLYRVPIFDPFVAEPCGTNSSSPSSVTSTDQGVAAAVTEAENKGVRSNVFYHSNNEMENLHGMLPSDAELAEFAADVESLLGRGLENQCVGIEDLGLMDAKEEECSVGSGKVKVEEEESPEMEMEMVGRDLSFELSFDYDTCDEVKEKVCDLELELGKDKGNEEEELGENVEGKRKKISLQLDYEAVIIAWASQKSPWTTAHKPKLDPDECWHQCMETYGTAIHHPYGEVGGFGIHPVIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPTFPLLNK 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01461 523 Pfam B-box zinc finger 121 164 IPR000315 GO:0008270
Spst10g01461 523 CDD Bbox1_BBX-like 123 166 - -
Spst10g01461 523 SMART bboxneu5 119 166 IPR000315 GO:0008270
Spst10g01461 523 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 114 512 - -
Spst10g01461 523 Pfam CCT motif 468 510 IPR010402 GO:0005515
Spst10g01461 523 ProSiteProfiles Zinc finger B-box type profile. 119 166 IPR000315 GO:0008270
Spst10g01461 523 ProSiteProfiles CCT domain profile. 468 510 IPR010402 GO:0005515
Spst10g01461 523 MobiDBLite consensus disorder prediction 169 206 - -
Spst10g01461 523 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01461 Spst-Chr10 15135715 15139726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01461 115 510 C2C2-CO-like Transcription Factor Family AT1G25440 45.952 1.25e-98 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Spst10g01461 zf-B_box 1.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01461 10 15135715 15139726 Spst10g01461 10 15135715 15139726 ECH