Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01444 ATGGCTTTGTTGTTCCTTTACAGGAGACCAGAAGGAAACCCGTTAGACCTTAACAATTTGCCCGATGAGTACTCTCGAGATGGCAAACAAGTCCTCGAAGACCATAGCTCTTCACCCGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACACTGAACCAGGCTCGTCAACTGGTCTTTCGTAGTGATCATAGCCTTGCTGCACAAGGTGCCCCTCACTTAGGATGCTGCCAACCGATAGGAGCCGGGGGTTATCACCCATCAGGAGATCCAACGGCACCGCTAAGATTCCCGAGGTACTTCTCAGGTTCATCCTCAACTCACATGCCACCACCCGCACCGACACCACCACAGCCATACCTGTATGCCTCACCTACAAGGCCAGTGTCCTTTGGGTCATCACAATTTCCTCACCAGCATGCGGTGAGTGATTATTATGTGGGTCATGTTATGAGTGGGAGCCATGGACACTATGTGGGAGGAGGAGGAGGAGGAGAGATCACAAGTAGTTACACCTGCATTGGTGCACCGGTGGGACAAGGTGGTGGGTTCGGTGGTGGTGGTGCTGGTAAGGACGGGTCACTGCATAATAATCAAGAGGAAGGGTTGAGTTGGGGAAGGGGCTATTCAGCAGGAGCACAGCATCGTTTGGATCCTCCCTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA 807 0.5217 MALLFLYRRPEGNPLDLNNLPDEYSRDGKQVLEDHSSSPGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNQARQLVFRSDHSLAAQGAPHLGCCQPIGAGGYHPSGDPTAPLRFPRYFSGSSSTHMPPPAPTPPQPYLYASPTRPVSFGSSQFPHQHAVSDYYVGHVMSGSHGHYVGGGGGGEITSSYTCIGAPVGQGGGFGGGGAGKDGSLHNNQEEGLSWGRGYSAGAQHRLDPPSAINRFQDGF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01444 268 PANTHER ZINC FINGER PROTEIN JAGGED 21 256 IPR045320 GO:0003700
Spst10g01444 268 MobiDBLite consensus disorder prediction 10 53 - -
Spst10g01444 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Spst10g01444 268 MobiDBLite consensus disorder prediction 22 53 - -
Spst10g01444 268 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Spst10g01444 268 FunFam Zinc finger protein STAMENLESS 1 33 108 - -
Spst10g01444 268 SUPERFAMILY beta-beta-alpha zinc fingers 51 103 IPR036236 -
Spst10g01444 268 Gene3D Classic Zinc Finger 35 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01444 Spst-Chr10 14961504 14963371 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01444 8 220 C2H2 Transcription Factor Family AT1G13400 44.344 9.80e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst10g01444 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01444 10 14961504 14963371 Spst10g01444 10 14961504 14963371 ECH