Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01430 ATGCCGGCGAAGGACGACGGCTCCGACAAGGAAAAATGCCTCGATCTTTTTCTGAAGATAGGTTTAGACGAGCGCACAGCTCGAAACACCGTCGCCAACAACAAGGTCACTGCCAATCTCACTTCCGTCATCAACGAGGCTGGTGTTACTGATGGATGCAGTCGAACGGTTGGAAATCTTCTTTATACGGTTGCGACGAAGTACCCTGCAAATGCCTTGCCGCATCGTCCAATATTACTACAGTACATTGTTTCTTCAAAGGTCAAAACAACGGCACAATTAGATGCAGCATTATCATTTCTTGCTACTACGGGCTTAGAGAATCTTGATTTGAAAACGTTTGAAGAAGCTTGTGGTGTCGGCATTGAGGTTTCAACAGAAGATATTAAACAAGCTGTTGATGAAGTTGTTGAGCAGAACAAGGCTACAATTTTGGAGCTACGCTATCGAACAAATGTGGGTGAGTTGCTTGGGCATGTGCGCAAGAGGCTGCCATGGGGTGATGCAAAAGTTGCCAAGCAACTTCTTGATACAAAACTATATGAACTACTTGGTGAGCGAACAGCAGCAGATGATGAGAAGCCTTCTAAAAAGAAGAAGGAAAAACCTGCCAAAGTAGAGGATAAAGTACCTGTTGCCACTCCTGAAAAGTCACCTGAAGAAGATCTTAATCCATATTTAATATTCCCTAACCCAGAGGAAAATTTCAAGGTGCATACTGAGGTGCCTTTTAGTGACGGTAGTATTTTGAGATGTTGTAATACAAGGGCGCTTCTTGACAAACACTTGAAAGCAACTGGTGGAAAAGTTTTGACCCGCTTTCCACCCGAACCAAATGGATATTTGCATATTGGTCACGCAAAATTTCTTCGTTCCAAGTTGAATGTTTGTGGCACTTCCAGGTATGATGATACAAATCCTGAAGCCGAGAAGAAAGAGTATATTGATCATATTGAAGAAATTGTCCAGTGGATGGGTTGGAAACCGTTCAAGATTACATACACTAGTGATTACTTCCAAGAATTGTATGAATTAGCTGTGGAGCTCATAAAAAGGGGTCATGCATATGTTGATCATCAGACACCTGATGAGATAAAGGAGTATAGGGAGAAGAAATTGAACAGTCCTTGGAGAGACAGACCAATTTCAGAGTCATTGAAGCTATTTGAGGATATGAGAAATGGTCTTGTAGAAGAAGGAAAAGCCACGCTTAGAATGAAGCAAGACATGCAGAGTGACAACTACAATATGTATGACCTTATTGCTTATAGAATTAAGTTTACTCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCTCACTGCATTGTTGATTCTCTAGAGAATATCACACATTCGCTGTGTACACTTGAATTTGAGACACGTCGAGCATCATATTATTGGTTGTTGCATGCGTTAGGCATTTACCAGCCTTATGTATGGGAGTATTCAAGGTTGAATGTATCTAACAGTGTTATGTCAAAGCGTAAGCTAAATCGTCTAGTTACAGAAAAGTGGGTTGATGGATGGGATGATCCTCGGTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACCCCTACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGTGTCAAGATGTACATTCTAATTGCTGATATATCAGTCTTTGACAAGTTTATGCCCAGAGGGGAATATTGCATTGGAATAATTGTTATTGCCAGAAGCAGAAAGAGAAAATATGGGGTAGATAAATCGACACTTCATTTAGCAAAGGCTGAACAGGGCAAACATGATGGCACTTTGATTTCTGTTGAACGCCTTGAATACCATGTTAGGGAAGAATTGAACAGAATAGCTCCTCGTGCAATGGTTGTTCTACATCCCCTAAAGGTTGTTATTACTAATCTTGAAGCCAACTCAGCAATTGAGGTTGATGCAAAGAAATGGCCTGATGCTCAAGCTGATGATGCTGCTGCTTTCTACAAGATTCCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCGAAAGATTATTATGGTCTAGCTCCTGGGAAATCTGCCATTCTCAGATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGACGATAATGAGACTATTCTTGAAATTCGTGCCGAGTATGATCCTTCAAAGAAGACGAAGCCTAAGGGGGTTCTTCATTGGGTTGCTCAACCTTCTCCCGGAGTTGATCCATTAAAGGTGGAAGTCAGGTTGTTTGAGAGACTATTCCTATCAGAGAATCCCGCTGAACTTGAGAATTGGCTTGGCGATTTAAACCCGAATTCCAAAGTGATAATTGCTGATGCTTACGGTGTGTCCTCCCTACAGAATGCGAAAGTCGGGGACAATTTCCAATTTGAACGATTAGACCCAGGAAATAGTTTGGACGGTTCAATTCCACGGAAGGTTAAGATTGATGATGTAGGTCTTATCATGAGTCAACAGTATCTGACAAAACGACTTGTTCAAGTGATGCACCTAGGTTGGAAACTTAACGATGAAAACCTTCGTGGAGTGGAATTTCTGGGTCATGCCTTGTGA 2604 0.4151 MPAKDDGSDKEKCLDLFLKIGLDERTARNTVANNKVTANLTSVINEAGVTDGCSRTVGNLLYTVATKYPANALPHRPILLQYIVSSKVKTTAQLDAALSFLATTGLENLDLKTFEEACGVGIEVSTEDIKQAVDEVVEQNKATILELRYRTNVGELLGHVRKRLPWGDAKVAKQLLDTKLYELLGERTAADDEKPSKKKKEKPAKVEDKVPVATPEKSPEEDLNPYLIFPNPEENFKVHTEVPFSDGSILRCCNTRALLDKHLKATGGKVLTRFPPEPNGYLHIGHAKFLRSKLNVCGTSRYDDTNPEAEKKEYIDHIEEIVQWMGWKPFKITYTSDYFQELYELAVELIKRGHAYVDHQTPDEIKEYREKKLNSPWRDRPISESLKLFEDMRNGLVEEGKATLRMKQDMQSDNYNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLHALGIYQPYVWEYSRLNVSNSVMSKRKLNRLVTEKWVDGWDDPRLMTLAGLRRRGMTPTAINAFVRGIGITRSVKMYILIADISVFDKFMPRGEYCIGIIVIARSRKRKYGVDKSTLHLAKAEQGKHDGTLISVERLEYHVREELNRIAPRAMVVLHPLKVVITNLEANSAIEVDAKKWPDAQADDAAAFYKIPFSNVVYIEHSDFRMQDSKDYYGLAPGKSAILRYAFPIKCTEVILADDNETILEIRAEYDPSKKTKPKGVLHWVAQPSPGVDPLKVEVRLFERLFLSENPAELENWLGDLNPNSKVIIADAYGVSSLQNAKVGDNFQFERLDPGNSLDGSIPRKVKIDDVGLIMSQQYLTKRLVQVMHLGWKLNDENLRGVEFLGHAL 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01430 867 Gene3D Ribosomal Protein L25; Chain P 750 811 IPR020056 -
Spst10g01430 867 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 625 810 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Spst10g01430 867 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 276 287 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Spst10g01430 867 PANTHER GLUTAMINE-TRNA LIGASE 19 552 - -
Spst10g01430 867 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 173 242 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Spst10g01430 867 FunFam Glutamine--tRNA ligase cytoplasmic 124 192 - -
Spst10g01430 867 Pfam tRNA synthetases class I (E and Q), catalytic domain 269 564 IPR020058 GO:0004812|GO:0005524|GO:0043039
Spst10g01430 867 SUPERFAMILY Ribosomal protein L25-like 625 810 IPR011035 GO:0006412
Spst10g01430 867 FunFam Glutamine--tRNA ligase cytoplasmic 9 122 - -
Spst10g01430 867 Gene3D - 7 122 IPR042558 -
Spst10g01430 867 Gene3D HUPs 248 566 IPR014729 -
Spst10g01430 867 MobiDBLite consensus disorder prediction 189 216 - -
Spst10g01430 867 SUPERFAMILY Nucleotidylyl transferase 262 549 - -
Spst10g01430 867 FunFam Glutamine--tRNA ligase 629 748 - -
Spst10g01430 867 Gene3D - 123 192 IPR042559 -
Spst10g01430 867 MobiDBLite consensus disorder prediction 189 226 - -
Spst10g01430 867 FunFam Glutamine--tRNA ligase cytoplasmic 239 565 - -
Spst10g01430 867 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 168 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Spst10g01430 867 Gene3D Ribosomal Protein L25; Chain P 618 747 IPR020056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01430 Spst-Chr10 14823255 14835705 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01430 10 14823255 14835705 Spst10g01430 10 14823255 14835705 ECH