Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01423 ATGGAAACCCAACTTGACTACAAAACCAAAAGAGCAAACCCCACTTCCCCAACGAGCTTGAAGCTCTTTGGGTTCAGCGTCCATGAAGACATCACCATGGAAGAAGAAGACGAGGTGGTCATGCATGATGACGTGGAAGACTCAACCACCAAGGCCTCTTCCACTTCGCCATCTGCCTCTCCAGACTCTGCCGGTGCCGGTGCCGGACCTCCGTCTTCCGGCGACCGGAAATACGAGTGCCAATACTGCTGCCGAGAGTTCGCTAATTCACAAGCACTTGGTGGGCACCAGAACGCGCACAAGAAAGAGCGTCAGCAACTGAAGCGTGCGCAGTTACAAGCCACGCGAAACGCCGCCGTTTCGTTCGTGCGAAACCCTATGATCTCCGCCTTCGCCCCTCCGCCGCACCTGCTGGCTCCGCCGGGCTCCATGGTGGTACCGGCGGCTCCGGCCTCGTGGGTGTACTTGCCGCCACGTGCCGCGCCTCCTCCCTTCCACGTATCAGTATCTCACGGTTGTGCGTTCCCGTCGGCGAATGGCCACAACGGGTTGAGTAGTAACAATAATAGCAACGTTAGCATAGCGGGTGTGAAAACCGCGGGTGCAGGGATGTTTCCCTATGTTGGCGTTGTAGGCGATTCGCAATTAGCTATGTCAACGGTGCAGGTGCAGGCCCGGGCCCACCACGCCATGGTTGATGGGGCCTCTTTGAGTAGGTTCTCCAAAGGGGATGGTGGGCCCAAGTTTGATGATGCATGGGGCTTGGACTTGCACCTTAGCCTTGCGCCAGCTGCGCCGTAA 801 0.578 METQLDYKTKRANPTSPTSLKLFGFSVHEDITMEEEDEVVMHDDVEDSTTKASSTSPSASPDSAGAGAGPPSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPMISAFAPPPHLLAPPGSMVVPAAPASWVYLPPRAAPPPFHVSVSHGCAFPSANGHNGLSSNNNSNVSIAGVKTAGAGMFPYVGVVGDSQLAMSTVQVQARAHHAMVDGASLSRFSKGDGGPKFDDAWGLDLHLSLAPAAP 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01423 266 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Spst10g01423 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Spst10g01423 266 FunFam Zinc finger protein GIS3 66 128 - -
Spst10g01423 266 MobiDBLite consensus disorder prediction 1 20 - -
Spst10g01423 266 PANTHER ZINC FINGER PROTEIN 5 11 265 IPR044299 GO:0010090
Spst10g01423 266 SUPERFAMILY beta-beta-alpha zinc fingers 74 105 IPR036236 -
Spst10g01423 266 Gene3D Classic Zinc Finger 66 125 - -
Spst10g01423 266 MobiDBLite consensus disorder prediction 33 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01423 Spst-Chr10 14727798 14728598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01423 4 265 C2H2 Transcription Factor Family AT1G68360 43.750 1.05e-49 162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01423 10 14727798 14728598 Spst10g01423 10 14727798 14728598 ECH