Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01422 ATGGGAATGGGTTCGAAAATGGAAGGACCGTCTACCCCAGCTAATCGCCGTGACCCATACGAGGTATTGTCCGTGTCGAGGGATTCAACCGATCAAGAAATTAAAACGGCTTACAGAAAGCTTGCTCTGAAGTATCACCCTGACAAAAATGCCAGCAATCCTGAAGCTTCGGAACTATTTAAAGAGGTTGCGTATTCTTATAGTATATTGTCTGACCCAGAAAAGAGAAGGCAGTATGACAGTGCTGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAGATTGATTTGTCTAATCTTGGGACGGTGAACACAATGTTTGCAGCTTTATTCAGCAAACTGGGTGTCCCTATCAAAACTACCATTTCAGCTAATGTTCTTGAAGAAGCTCTGAACGGAACAGTTACAGTCAGACCCCTTCCAATTGGAACATCAGTCAGTGGAAAGGTAGACAAGCAATGTGCTCATTTTTTTGGTGTGACAATAAACGAACAGCAAGCTGAGTCAGGCATAGTAGTAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTACTTTGAACATGATGTGAATGGAGGCTATGGTCTGGCATTGCAGGAAGATAGTGAGAAGACTGGCAAGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGTTAGCAATGGCCAAGGATCCTGAAGGGGCCTTCTTTAAAAGGTTGGAAGGTCTTCAGCCTTGTGAAGTCTCGGAACTAAAGCCTGGCACTCACATATTTGCTGTTTATGGAGATAACTTCTTTAAGACTGCTAGTTATACTATTGAGGCAGTATGTGCAAAATCATATGAAGATACCACGCAAAAACTGAAGGATGTTGAAGCTCAGATTTTAAGAAAGAGGAATGAGCTACGCCAGTTTGAAGCAGAATACAGAAAGGCATTGGCACGCTATCAGGAAGTGACAGACAGATACACTAAAGAAAAACAATCTGTAGACGAGCTTCTGAAACAAAGAGATGGTATCCATTCTTCCTTCACTATTGTGAAGTCAACCAATATTAGTGGAAATGGTAGTAATTTGAGCAATGGGAGTTCTAGCAAACTGACTGGTGAAGAGAGCCCTGGGGAAGATGGAGGATCAGATGGGAAGGACAATCAATCAGCTTGGGTTGCGGTTGCAGTTGCAGTTGCAGTTTATGTCTGGAATGATTTTCCTTTGCTTGGTTCCCGACAAGTTGGTTAA 1260 0.4246 MGMGSKMEGPSTPANRRDPYEVLSVSRDSTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVDKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEHDVNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSYEDTTQKLKDVEAQILRKRNELRQFEAEYRKALARYQEVTDRYTKEKQSVDELLKQRDGIHSSFTIVKSTNISGNGSNLSNGSSSKLTGEESPGEDGGSDGKDNQSAWVAVAVAVAVYVWNDFPLLGSRQVG 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01422 419 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
Spst10g01422 419 MobiDBLite consensus disorder prediction 362 390 - -
Spst10g01422 419 CDD DnaJ 18 72 IPR001623 -
Spst10g01422 419 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Spst10g01422 419 Gene3D DnaJ domain 4 100 IPR036869 -
Spst10g01422 419 Coils Coil 288 343 - -
Spst10g01422 419 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 389 - -
Spst10g01422 419 PRINTS DnaJ domain signature 20 38 IPR001623 -
Spst10g01422 419 PRINTS DnaJ domain signature 38 53 IPR001623 -
Spst10g01422 419 PRINTS DnaJ domain signature 55 75 IPR001623 -
Spst10g01422 419 PRINTS DnaJ domain signature 75 94 IPR001623 -
Spst10g01422 419 MobiDBLite consensus disorder prediction 362 377 - -
Spst10g01422 419 Pfam DnaJ domain 18 80 IPR001623 -
Spst10g01422 419 MobiDBLite consensus disorder prediction 1 28 - -
Spst10g01422 419 FunFam Chaperone protein dnaJ 16 3 100 - -
Spst10g01422 419 SMART dnaj_3 17 75 IPR001623 -
Spst10g01422 419 SUPERFAMILY Chaperone J-domain 14 88 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01422 Spst-Chr10 14710222 14715979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01422 11 90 C2H2 Transcription Factor Family AT1G74250 42.353 4.76e-13 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01422 10 14710222 14715979 Spst10g01422 10 14710222 14715979 ECH