Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01397 ATGGATTCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTTTGCACTCAGTTTTCTACCAAGACAAACAAGATGATGGCATAATTGATCTGGGTCTTAGTCTCGGAACTGTTCAACATGAAGCTTACCATTCTTCTTCTACTAACTTGTACGATGATGACCTTATGGGTTGGCCTCACTCTAATGTGAACCTCAAGAATTCAAGCACAATGCATGGTAGACCTGCCCACGAAAAATGTGATGAAGAGATAGAAGGGGTCCAGAGCAAAGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGGGTTACCATCGGTAGGAAAATCTGTGTACTTGATCACGGTGGATACTCAAGCCTAGCACTCCAATTGGAAGACATGTTTGGAAACCAATCTGTTTCCGGATTACGATTGTTCCAATCGGGATCAGAGTACTCATTGTTCTACAAGGACAGACAAGATAATTGGAGACCTGTGGGTGATGTACCATGGAAGGAATTCATAGAATGTGTGAAGAGGTTGAGGATTGCAAGAAAGAATGCAGGCATAGTTTCTTGTTCATCTAGATACACCTAA 576 0.4167 MDSNTSSFLLNSSTLHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSSTNLYDDDLMGWPHSNVNLKNSSTMHGRPAHEKCDEEIEGVQSKERWAYVKVNMDGVTIGRKICVLDHGGYSSLALQLEDMFGNQSVSGLRLFQSGSEYSLFYKDRQDNWRPVGDVPWKEFIECVKRLRIARKNAGIVSCSSRYT 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01397 191 ProSiteProfiles PB1 domain profile. 93 181 IPR000270 GO:0005515
Spst10g01397 191 Pfam AUX/IAA family 46 179 IPR033389 -
Spst10g01397 191 SUPERFAMILY CAD & PB1 domains 93 176 - -
Spst10g01397 191 Gene3D - 88 188 - -
Spst10g01397 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 31 180 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01397 Spst-Chr10 14466011 14467212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01397 75 176 B3 DNA Binding Superfamily AT1G19220 30.172 2.12e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Spst10g01397 AUX_IAA 5.9e-24 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01397 10 14466011 14467212 Spst10g01397 10 14466011 14467212 ECH