Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01386 ATGCTTAATAAGGACGCTTGCTCTCCCTCCTCCAATGGCGGATTCGGCGCCGCTGCCGCAGCCGGTCAAATGCCGTCAACCGGGGGCGTCTACAGTTCGCTGTACTCAGCTCTGTCGAACGAAAACCATCCGTCGCTCTCCGCTAACTGCAGCGGCGGCGGCGGCGGCGTTTCGCTCTATCCGTACTCCGAGTCAACAACTCAGTATGACTCGTGCGTAATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGCCTGAATCGCCTGGTGGAGACTTCCAAAGAGGTGGATGCTCTGAGGCAGGAGAACGGCCAGCTGCGAGCCACGAACAAGGAGCTGCAGAGGCAGCTGCACCTTGTCGTTCAGGCTTCGCTGGAGAGTCAGTTCGCCGCTGCAGCCGGCGGGTCCTCTGGCCAGACTCAACCGACGCTGTTCGATGTCTTGCATGGCTTCCGCAGCCTCCACATTGGGGAAGGGAAAGAGAATTATGCCGATTGGAATAACAACAATAATCATAATCACAACAATATGAATCATAATAATAGTAAGGACCTGCAGGAAGTTTCGGACGAGAGTCCAACGAGCGTGATGGAGAACAACGTTGTGGAAGTGGAGAGATTTTCTCTCCCTAAGAGCATATCTGTGAGATCCAATGGCTACTTGAAGATGGCTCAGTCTGCTGGTCTTGCCACCAATAATAATGCAACTCGCAATAAAGGTGCCACTCGCCCACGCGCCACCGCAACTCCATCTGAAGCCGTTCAGAAGGTATATGTGCGTGGAGGTCAGAAAGAGGAAGAGCCTCTGGAAATGGTAGTGTATAATCAAGGGATGTTCAAAACTGAGCTGTGTAATAAATGGCAGGAAACTGGCACATGTCCATATGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTTCGCCCAGTCATCCGCCATCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGAGTTGTGTGCCCATATGGCCACAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTGTCGTATCTCAGCCTAAGCCCAGAACAATGAAGCTGGAAAGATAA 1098 0.5255 MLNKDACSPSSNGGFGAAAAAGQMPSTGGVYSSLYSALSNENHPSLSANCSGGGGGVSLYPYSESTTQYDSCVIQKHQDMVNRQSMCLNRLVETSKEVDALRQENGQLRATNKELQRQLHLVVQASLESQFAAAAGGSSGQTQPTLFDVLHGFRSLHIGEGKENYADWNNNNNHNHNNMNHNNSKDLQEVSDESPTSVMENNVVEVERFSLPKSISVRSNGYLKMAQSAGLATNNNATRNKGATRPRATATPSEAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01386 365 FunFam Zinc finger protein 36, C3H1 type-like 1 314 350 - -
Spst10g01386 365 SUPERFAMILY CCCH zinc finger 277 312 IPR036855 GO:0046872
Spst10g01386 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 306 IPR000571 GO:0046872
Spst10g01386 365 SMART c3hfinal6 280 307 IPR000571 GO:0046872
Spst10g01386 365 SMART c3hfinal6 318 345 IPR000571 GO:0046872
Spst10g01386 365 Gene3D - 314 350 - -
Spst10g01386 365 Gene3D - 275 313 - -
Spst10g01386 365 PANTHER CCCH ZINC FINGER/TIS11-RELATED 77 352 IPR045877 GO:0003729
Spst10g01386 365 ProSiteProfiles Zinc finger C3H1-type profile. 318 346 IPR000571 GO:0046872
Spst10g01386 365 Coils Coil 91 118 - -
Spst10g01386 365 SUPERFAMILY CCCH zinc finger 314 348 IPR036855 GO:0046872
Spst10g01386 365 ProSiteProfiles Zinc finger C3H1-type profile. 280 308 IPR000571 GO:0046872
Spst10g01386 365 FunFam zinc finger CCCH domain-containing protein 15-like 274 313 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01386 62 360 C3H Transcription Factor Family AT1G68200 50.000 1.67e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst10g01386 zf-CCCH 3e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01386 10 14346782 14349067 Spst10g01386 10 14346782 14349067 ECH