Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01376 ATGAAGGACCGCCGCACGCTGTCCTCCTACAGCTCCGTTTACATTCCGCCGCACCACCGTTTACGCTCCGTCGCCAATTTCAACAACTCTCCCTCTCCAGTTAGCGCCAAACCCCACGAAAACCCTACACACGCTGTTTCTACTCTGCAACCGTCGTTGACGGAACCAGTTCCCGATAAGGCTCATTCGCGTTTCGTTTCTGCTTATGACGACACTGTTTCCGAGGAAGGCTCCGATCGTGAATTCGAACCTCCCTCGGTAACGAATGCTTCCCTTAATGATAATACGGATGAGTGGAAGCGGAAATTTACCGTGCTCTTAAATGACAAGAGTAAGCACGAGTTGATCTCGAGAGAGAAAAAGGATAGGCGTGATTTTGAGCGAATAGCAGTTCTAGCAAGCAGAATGGGGTTGTATAGCCATGTGTATGCTAAGGTTGTTGTCTTCAGTAAGGTCCCACTTCCAAATTACAGATATGATTTGGACGATCGGAAGCCTCAGAGGGAGGTGACCTTGTCTATCACCACATTTACCCGTGTTAATGCATATTTTGAGGAATATCGTAGCCAAAAATCCAGGATGAGCAGAAGCTGCTCGGATTTGTCATCTGCAAGATCAAGCAGTAATGGCAGTATTGGTATGGATGAGGGGCTTTTTAACCATCCTGAGCCACTAGCATCAAGTAAGGCTGTTATGGAGAAAATTGTTTGGCAGAGGAGCTTACAAATGCGTGATCAGCAGCAAGTTTGGCAGGGCATGCTGGAGTGGGGCAAAACTGAAAACTATGATAGGTGGAACAAGTTTATATCTTTGGACCATGATTACTCCATTTTGCTTGGTGTACACATCTGGTACATACCTGGTGCAGGACTACAAGAATCTCCTGAAGGAAGTAGAATGCTAGAATTTCGTAGAAGTCTCCCAGCTTATAAAAAGAAAGAAGCAATCTTATCAGTCATATCAAGGAATCAGGTAGTTATCATTTCAGGCGAAACAGGTTGTGGCAAGACAACACAAATTCCACAATTTATTTTAGAATCTGAGATAGAATCAGTTCGTGGAGCTGCTTGTAATATCATATGCACACAGCCAAGACGCATTTCAGCCATGTCAGTTTCTGAAAGAGTGGCCTGCATTTTGTTAAGAAGATTACTAGCTGATAGAAAGTTAAAAGGTGTAACTCATGTTATTGTGGATGAAATTCATGAGCGAGGGATGAATGAAGATTTTCTGCTTATTATCCTTAAAGAACTCCTTCCATATCGGCCAGAACTGAAACTGATTTTGATGAGTGCTACCCTGGATGCAGAGCACTTTTCTTCGTACTTCAATGGGGCTCCGACTATGTTTATTCCGGGCTTCACATACCCTGTTAGAACTCATTTTTTGGAGAACATTCTTGAAAAGACGGGCTACAGATTAACTCCTTATAATCAAATTGATGATTATGGTCAAGAAAGGATGTGGAAAATGAATAGACAGGCCCCAAGAAAGAGGAAAAGTCAAATTGCTTCCGTGGTAGAGGATGCAATTAGAGCTGCTGATTTCAAAGGTTACAGTCCACGTACACAGGAGTCTTTGTCATGTTGGAATCCTGACTGTATTGGTTTTAGTCTCATAGAATATATTTTATGCAATATATGTGAGAATGAAAGGCCTGGTGCTGTTTTGGTTTTCATGACTGGATGGGATGATATAAGCTCTCTGAAAGAAAAGCTCCTGACACATACTGTCTTGGGAGATCCAAACTGTGTTTTGTTGCTTACATGTCATGGCTCAATGGCTAGTTCAGAACAGAGGTTAATATTTGAAGAGCCTGAAGATGGAGTAAGAAAAATAGTGTTAACAACAAATATTGCTGAAACCAGTATCACAATAAATGATGTTGTTTTTGTTCTTGACTGCGGAAAAGCAAAAGAAACATCATATGATGCCCTGAATAACACGCCTTGTCTGCTTCCTACATGGATCTCTAAGGTTTCTGCTCAACAACCTTATCTGGAAATTTCCATTGTGTTGAAAGGCCAGAGAAGAGGAAGAGCTGGTCGGGTACAACCAGGAGAGTGTTACCATCTCTACCCTAGATGTGTGTATGATGCTTTTGCAGAGTATCAGTTGCCAGAAATTTTGAGAACACCTTTGCAATCTCTCTGTTTACAAATTAAAAGTCTACGACTTGGAAGTATATCTGAGTTCTTGTCCAGGGCATTGCAGTCTCCTGAGATACTTGCGGTACAAAATGCAATTGAGTATTTAAAAATAATTGGAGCTTTGGATAAAGATGAGAATCTCACTATTCTAGGGCGCTATCTGACAATGCTTCCTATGGAGCCCAAACTCGGCAAGATGCTAATATTAGGTGCTATTTTCAATTGCCTGGATCCTATATTAACTGTTGTTGCTGGGCTTAGCGTGCGAGATCCTTTTCTAACACCATTGGATAAAAAGGATCTTGCAGAGGCAGCAAAATCTCAATTCTGTGGTGCATACAGTGACCACCTTGCACTTGTAAGGGCATATGAAGGCTGGAAAGATGCTGAAATGGACCTGGGTGGATATGAATACTGCTGGAAAAATTTTCTTTCCTGGCAATCCATGAAAGCTATTGATGCTCTTCGGAGAGAGTTCATATGTCTGCTCAAGGATACTGGATTAGTTGACAGCAGCGCAGCTAGCTGCAATGCATGGGTCTCCGATGTAAATCTTATCCGAGCAGTTATTTTCTATGGTCTATATCCTGGAATTGGTTCTGTTGTGAATAACGAGAAATCATTCTCTTTGAAAACAATGGAGGATGGTCAAGTGCTCCTATATTCGAACTCAGTGAATGCTCGGGAAACTAAAATTCCATATCCATGGCTAGTTTTCAACGAGAAGATAAAAGTGAACTCAGTTTTTCTCCGTGATTCAACAGCAGTGTCTGATTCAGTGGTTCTTCTATTTGGTGGAAGCTTATTGAAAGGAGATGCTGATAATCACTTGAAAATGTTGGGAGGATATCTTGAGTTTTTTATGGATCCCAGTGTTGCAGAAATGTATCAGAGTATTAGGAGAGAACTTGATGCCTTCATTCAGTGCAAACTACTTTTTCCCAGAATGGGCATACAGTGGTATCATGATCTCCTATCTGCAGTACGGCTGCTAATTTCAGGTGACAAATGTGAAGGTCGATTTGTATTTGGTCGCCAGGTCCTTAAATCATCAAAGAAATCTGTTATGATGGCCTCACATCCAACCTTGGTTTCAAGGACTGAGAGTGGACCTGGGGGAGATAATTCTAAAAGTCAGCTCCAAACCTTGCTTACAAGAGCAGGATATGCGGCACCCGTCTACAAGACTAAACAATTGAAGGACAGTCAGTTTCAGGCTACAGTTGAATTCAGTGGAATGCAGGTAATAGGTCAACCTTGTAACAATAAAAAGAGTGCAGAAAAGGATGCTGCAGCAGAGGCACTGCAGTGGCTGATGGGTGGAAAGCAAACAGGCAGGGAGTATATCGATCACGTGTCGAAGTTACTTAAGAAAAGTAAGAAGGATCACAATTGA 3546 0.4202 MKDRRTLSSYSSVYIPPHHRLRSVANFNNSPSPVSAKPHENPTHAVSTLQPSLTEPVPDKAHSRFVSAYDDTVSEEGSDREFEPPSVTNASLNDNTDEWKRKFTVLLNDKSKHELISREKKDRRDFERIAVLASRMGLYSHVYAKVVVFSKVPLPNYRYDLDDRKPQREVTLSITTFTRVNAYFEEYRSQKSRMSRSCSDLSSARSSSNGSIGMDEGLFNHPEPLASSKAVMEKIVWQRSLQMRDQQQVWQGMLEWGKTENYDRWNKFISLDHDYSILLGVHIWYIPGAGLQESPEGSRMLEFRRSLPAYKKKEAILSVISRNQVVIISGETGCGKTTQIPQFILESEIESVRGAACNIICTQPRRISAMSVSERVACILLRRLLADRKLKGVTHVIVDEIHERGMNEDFLLIILKELLPYRPELKLILMSATLDAEHFSSYFNGAPTMFIPGFTYPVRTHFLENILEKTGYRLTPYNQIDDYGQERMWKMNRQAPRKRKSQIASVVEDAIRAADFKGYSPRTQESLSCWNPDCIGFSLIEYILCNICENERPGAVLVFMTGWDDISSLKEKLLTHTVLGDPNCVLLLTCHGSMASSEQRLIFEEPEDGVRKIVLTTNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPTWISKVSAQQPYLEISIVLKGQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPEILAVQNAIEYLKIIGALDKDENLTILGRYLTMLPMEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFLTPLDKKDLAEAAKSQFCGAYSDHLALVRAYEGWKDAEMDLGGYEYCWKNFLSWQSMKAIDALRREFICLLKDTGLVDSSAASCNAWVSDVNLIRAVIFYGLYPGIGSVVNNEKSFSLKTMEDGQVLLYSNSVNARETKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVVLLFGGSLLKGDADNHLKMLGGYLEFFMDPSVAEMYQSIRRELDAFIQCKLLFPRMGIQWYHDLLSAVRLLISGDKCEGRFVFGRQVLKSSKKSVMMASHPTLVSRTESGPGGDNSKSQLQTLLTRAGYAAPVYKTKQLKDSQFQATVEFSGMQVIGQPCNNKKSAEKDAAAEALQWLMGGKQTGREYIDHVSKLLKKSKKDHN 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01376 1181 SMART DRBM_3 1093 1156 IPR014720 -
Spst10g01376 1181 Gene3D - 288 378 IPR027417 -
Spst10g01376 1181 Gene3D - 379 453 IPR027417 -
Spst10g01376 1181 SMART ha2_5 747 837 IPR007502 GO:0004386
Spst10g01376 1181 CDD DEXHc_RHA-like 323 451 - -
Spst10g01376 1181 Pfam Double-stranded RNA binding motif 1093 1155 IPR014720 -
Spst10g01376 1181 FunFam Putative ATP-dependent RNA helicase DHX36 727 831 - -
Spst10g01376 1181 SMART ultradead3 304 466 IPR014001 -
Spst10g01376 1181 FunFam DExH-box ATP-dependent RNA helicase DExH3 1071 1160 - -
Spst10g01376 1181 MobiDBLite consensus disorder prediction 24 54 - -
Spst10g01376 1181 Gene3D - 1067 1160 - -
Spst10g01376 1181 MobiDBLite consensus disorder prediction 24 58 - -
Spst10g01376 1181 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 903 984 IPR011709 -
Spst10g01376 1181 CDD SF2_C_RHA 521 693 - -
Spst10g01376 1181 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 539 725 IPR001650 -
Spst10g01376 1181 Pfam Helicase associated domain (HA2) 748 821 IPR007502 GO:0004386
Spst10g01376 1181 SUPERFAMILY dsRNA-binding domain-like 1088 1165 - -
Spst10g01376 1181 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1092 1157 IPR014720 -
Spst10g01376 1181 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 317 452 IPR014001 -
Spst10g01376 1181 PANTHER ATP-DEPENDENT RNA HELICASE 379 1002 - -
Spst10g01376 1181 Gene3D - 727 829 - -
Spst10g01376 1181 MobiDBLite consensus disorder prediction 74 93 - -
Spst10g01376 1181 Gene3D - 538 704 IPR027417 -
Spst10g01376 1181 Pfam Helicase conserved C-terminal domain 541 684 IPR001650 -
Spst10g01376 1181 SMART helicmild6 572 685 IPR001650 -
Spst10g01376 1181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 850 IPR027417 -
Spst10g01376 1181 FunFam DExH-box ATP-dependent RNA helicase DExH3 535 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01376 Spst-Chr10 14203166 14213991 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01376 10 14203166 14213991 Spst10g01376 10 14203166 14213991 ECH